Wall clock time and date at job start Mon Mar 30 2020 02:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99821 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00341 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99962 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46925 * 180.02562 * 10 9 7 12 12 O 1.20822 * 120.00226 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99763 * 180.02562 * 11 10 9 14 14 C 1.45198 * 117.00173 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47372 * 179.97438 * 14 13 11 16 16 F 1.39897 * 115.54717 * 34.41868 * 15 14 13 17 17 C 1.52999 * 117.49887 * 248.74980 * 15 14 13 18 18 C 1.52992 * 117.50074 * 180.08925 * 15 14 13 19 19 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 21 21 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 22 22 H 1.09000 * 109.46497 * 60.00269 * 10 9 7 23 23 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 24 24 H 1.09003 * 109.47123 * 300.00357 * 14 13 11 25 25 H 1.09003 * 109.46718 * 60.00123 * 14 13 11 26 26 H 1.08998 * 117.50059 * 359.97438 * 17 15 14 27 27 H 1.08996 * 117.49993 * 145.02296 * 17 15 14 28 28 H 1.08999 * 117.50342 * 214.98157 * 18 15 14 29 29 H 1.09008 * 117.50043 * 359.97377 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4917 -4.9672 -0.0045 12 8 0.2834 -4.9672 -0.0054 13 8 2.1628 -6.1297 -0.0052 14 6 1.3720 -7.3474 -0.0075 15 6 2.3040 -8.5608 -0.0085 16 9 3.4967 -8.4060 0.7060 17 6 2.3452 -9.4189 -1.2746 18 6 1.6581 -9.9477 -0.0131 19 1 -0.4851 0.8400 0.0004 20 1 0.6247 -2.5563 -0.8920 21 1 0.6240 -2.5576 0.8880 22 1 2.8718 -3.6051 0.8873 23 1 2.8719 -3.6036 -0.8927 24 1 0.7422 -7.3733 0.8817 25 1 0.7442 -7.3712 -0.8983 26 1 1.7080 -9.1192 -2.1066 27 1 3.3015 -9.8632 -1.5506 28 1 2.1626 -10.7397 0.5403 29 1 0.5691 -9.9958 -0.0149 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308199690.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:12 Heat of formation + Delta-G solvation = -142.385384 kcal Electronic energy + Delta-G solvation = -13978.372063 eV Core-core repulsion = 11201.842642 eV Total energy + Delta-G solvation = -2776.529421 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.66281 -41.53180 -38.22678 -37.07626 -35.66335 -33.18338 -29.52973 -27.63706 -24.17715 -23.60145 -21.86696 -21.50048 -19.14101 -18.40676 -17.84648 -17.66024 -16.71295 -16.47239 -16.18555 -15.83073 -15.19146 -14.52455 -14.34752 -14.12404 -14.00329 -13.39728 -13.05901 -12.83763 -12.57334 -12.51951 -12.04681 -11.95773 -11.81298 -11.75104 -11.39440 -11.23701 -10.80393 -10.58166 -8.20651 -6.34383 1.17042 1.42538 1.45649 1.51729 1.57735 2.42083 2.49768 2.90803 3.13141 3.40336 3.61225 3.71762 3.97976 4.22465 4.24531 4.43103 4.45382 4.61952 4.84605 4.87630 4.98556 5.05107 5.27296 5.46045 5.53999 5.79690 6.12435 6.72632 6.84173 7.35812 8.91993 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.078416 B = 0.004954 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.983601 B = 5651.116397 C = 5870.278962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.039 3.961 10 C -0.095 4.095 11 C 0.468 3.532 12 O -0.540 6.540 13 O -0.356 6.356 14 C 0.076 3.924 15 C 0.003 3.997 16 F -0.188 7.188 17 C -0.170 4.170 18 C -0.151 4.151 19 H 0.264 0.736 20 H -0.008 1.008 21 H -0.009 1.009 22 H 0.114 0.886 23 H 0.117 0.883 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.126 0.874 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.480 -18.310 -1.648 19.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.181 1.181 7 C -0.583 4.583 8 H 0.095 0.905 9 C 0.001 3.999 10 C -0.132 4.132 11 C 0.313 3.687 12 O -0.429 6.429 13 O -0.273 6.273 14 C 0.002 3.998 15 C -0.015 4.015 16 F -0.168 7.168 17 C -0.207 4.207 18 C -0.188 4.188 19 H 0.073 0.927 20 H 0.011 0.989 21 H 0.009 0.991 22 H 0.132 0.868 23 H 0.135 0.865 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.144 0.856 27 H 0.136 0.864 28 H 0.143 0.857 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.009 -18.244 -1.621 18.988 hybrid contribution -0.074 0.907 0.189 0.930 sum 4.935 -17.337 -1.432 18.082 Atomic orbital electron populations 1.70152 1.08183 1.27971 1.51185 1.26095 0.95756 1.03844 0.94481 0.85305 0.78627 0.77674 0.78559 1.19646 1.21083 1.18102 1.21640 0.94104 0.91323 1.51232 0.90538 1.18805 0.93639 0.91802 0.95608 1.21539 0.99443 0.86009 1.06248 1.24525 0.87183 0.86278 0.70710 1.90625 1.17211 1.88204 1.46902 1.86565 1.41720 1.14856 1.84137 1.23119 0.92511 0.79515 1.04612 1.21265 0.85107 0.93374 1.01764 1.92813 1.47654 1.96739 1.79633 1.23952 1.04706 1.00019 0.92052 1.23887 1.02868 0.92166 0.99925 0.92707 0.98912 0.99070 0.86817 0.86526 0.89963 0.88150 0.85590 0.86370 0.85730 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.19 13.29 21.45 0.28 -57.91 15 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 15 3 Si 0.97 43.89 29.54 68.60 2.03 45.92 15 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 15 5 H -0.29 -12.70 7.11 99.48 0.71 -11.99 15 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 15 7 C -0.55 -30.68 9.11 25.60 0.23 -30.44 15 8 H 0.08 3.95 7.74 -2.91 -0.02 3.92 15 9 C 0.04 2.11 4.26 29.85 0.13 2.24 15 10 C -0.10 -3.92 5.75 29.85 0.17 -3.75 15 11 C 0.47 18.77 7.96 71.24 0.57 19.34 15 12 O -0.54 -25.08 15.73 21.98 0.35 -24.73 15 13 O -0.36 -12.10 9.98 -51.41 -0.51 -12.61 15 14 C 0.08 2.02 5.72 71.98 0.41 2.43 15 15 C 0.00 0.07 3.63 -10.80 -0.04 0.03 15 16 F -0.19 -5.29 17.26 44.97 0.78 -4.52 15 17 C -0.17 -2.47 10.16 30.62 0.31 -2.16 15 18 C -0.15 -1.98 10.24 30.61 0.31 -1.66 15 19 H 0.26 15.38 8.31 -92.71 -0.77 14.61 15 20 H -0.01 -0.46 8.10 -2.38 -0.02 -0.48 15 21 H -0.01 -0.56 8.10 -2.39 -0.02 -0.57 15 22 H 0.11 4.24 8.14 -2.39 -0.02 4.22 15 23 H 0.12 4.27 8.14 -2.39 -0.02 4.25 15 24 H 0.08 2.14 8.13 -2.39 -0.02 2.13 15 25 H 0.10 2.36 7.89 -2.39 -0.02 2.34 15 26 H 0.13 1.49 8.05 -2.39 -0.02 1.47 15 27 H 0.12 1.52 8.14 -2.39 -0.02 1.50 15 28 H 0.12 1.33 8.14 -2.39 -0.02 1.32 15 29 H 0.13 1.23 8.14 -2.38 -0.02 1.21 15 Total: -1.00 -71.45 266.43 6.61 -64.84 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: 1.13 Total: 2.74 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 2.56 Total: -13.74 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.28 Total: -57.91 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.17 Total: -37.34 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.78 Total: -4.52 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -71.45 6.61 -64.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308199690.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.544 kcal (2) G-P(sol) polarization free energy of solvation -71.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds