Wall clock time and date at job start Mon Mar 30 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48501 * 109.47230 * 270.00036 * 3 2 1 5 5 H 1.48509 * 109.46773 * 29.99728 * 3 2 1 6 6 H 1.48499 * 109.47461 * 149.99687 * 3 2 1 7 7 C 1.37876 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00113 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00028 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47491 * 180.02562 * 9 7 2 11 11 O 1.45191 * 109.47682 * 179.97438 * 10 9 7 12 12 C 1.34227 * 117.00289 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00236 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00228 * 179.97438 * 12 11 10 15 15 F 1.39901 * 112.84519 * 45.33700 * 14 12 11 16 16 C 1.53780 * 113.61555 * 274.14513 * 14 12 11 17 17 C 1.53962 * 87.01608 * 220.04475 * 16 14 12 18 18 C 1.53780 * 87.11158 * 25.36395 * 17 16 14 19 19 H 0.96996 * 119.99851 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47537 * 60.00060 * 9 7 2 21 21 H 1.08996 * 109.47054 * 299.99801 * 9 7 2 22 22 H 1.09001 * 109.47121 * 59.99184 * 10 9 7 23 23 H 1.09005 * 109.46964 * 299.99864 * 10 9 7 24 24 H 1.09000 * 113.61461 * 334.56184 * 16 14 12 25 25 H 1.08995 * 113.61894 * 105.46921 * 16 14 12 26 26 H 1.08997 * 113.53543 * 270.80721 * 17 16 14 27 27 H 1.08998 * 113.73879 * 139.94319 * 17 16 14 28 28 H 1.09005 * 113.61134 * 220.09229 * 18 17 16 29 29 H 1.09002 * 113.69315 * 89.19485 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 8 5.4736 -2.6365 0.0009 12 6 6.0830 -3.8324 0.0014 13 8 5.4251 -4.8458 0.0013 14 6 7.5880 -3.9113 0.0008 15 9 8.1782 -3.0341 0.9170 16 6 8.2079 -3.8426 -1.4049 17 6 9.1994 -4.9217 -0.9327 18 6 8.1296 -5.3480 0.0866 19 1 -0.4850 0.8400 -0.0004 20 1 3.8746 -0.6799 0.8911 21 1 3.8752 -0.6804 -0.8888 22 1 3.6586 -3.1502 -0.8892 23 1 3.6580 -3.1505 0.8908 24 1 7.5375 -4.1813 -2.1948 25 1 8.6776 -2.8849 -1.6287 26 1 10.1008 -4.5143 -0.4750 27 1 9.4127 -5.6810 -1.6850 28 1 8.5362 -5.6036 1.0651 29 1 7.4371 -6.0991 -0.2935 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308415537.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:22 Heat of formation + Delta-G solvation = -122.020240 kcal Electronic energy + Delta-G solvation = -14363.439205 eV Core-core repulsion = 11587.792882 eV Total energy + Delta-G solvation = -2775.646323 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.01978 -40.30025 -37.91966 -36.13283 -33.34059 -30.84556 -27.38888 -26.21291 -24.97969 -21.77344 -20.68939 -19.71273 -18.14735 -17.09132 -16.55062 -16.36758 -15.68715 -15.10979 -14.85497 -14.23875 -13.75001 -13.51573 -13.15727 -12.80775 -12.52511 -11.82819 -11.67509 -11.54730 -11.33723 -11.28486 -10.74356 -10.73614 -10.54642 -9.98636 -9.86147 -9.75900 -9.37087 -8.64005 -6.14692 -4.16253 2.14866 2.79049 3.27300 3.34790 3.40068 3.79096 3.88661 4.31452 4.35315 4.37561 4.68549 5.18891 5.23327 5.29087 5.36627 5.53533 5.55680 5.60333 5.87521 5.90743 6.02397 6.39390 6.63683 7.11431 7.18809 7.59290 7.90198 8.37314 8.86341 9.44768 10.97779 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.057139 B = 0.006192 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.911948 B = 4520.528644 C = 4795.432148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.076 0.924 9 C -0.010 4.010 10 C 0.079 3.921 11 O -0.349 6.349 12 C 0.452 3.548 13 O -0.496 6.496 14 C 0.098 3.902 15 F -0.169 7.169 16 C -0.145 4.145 17 C -0.138 4.138 18 C -0.138 4.138 19 H 0.266 0.734 20 H 0.029 0.971 21 H 0.024 0.976 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.105 0.895 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.137 -7.663 -1.956 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.047 4.047 10 C 0.007 3.993 11 O -0.265 6.265 12 C 0.293 3.707 13 O -0.384 6.384 14 C 0.079 3.921 15 F -0.149 7.149 16 C -0.182 4.182 17 C -0.175 4.175 18 C -0.175 4.175 19 H 0.076 0.924 20 H 0.047 0.953 21 H 0.043 0.957 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.124 0.876 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 17.733 -7.787 -1.923 19.463 hybrid contribution 0.119 0.973 0.141 0.990 sum 17.851 -6.815 -1.782 19.191 Atomic orbital electron populations 1.69893 1.06282 1.27256 1.50016 1.24932 0.94774 0.99202 0.94056 0.86751 0.80477 0.83226 0.78777 1.20020 1.21113 1.18704 1.20829 0.88183 0.95080 1.52553 0.90626 1.19636 0.97042 0.89986 0.98033 1.23497 0.71905 1.01946 1.01960 1.86551 1.26619 1.31498 1.81833 1.23494 0.90898 0.82828 0.73488 1.90658 1.66191 1.36603 1.44991 1.21852 0.86073 0.92247 0.91958 1.92925 1.84272 1.70257 1.67415 1.23574 0.98758 1.01945 0.93952 1.22908 0.97171 0.98504 0.98907 1.23540 0.98436 0.93550 1.02009 0.92393 0.95253 0.95725 0.91460 0.91449 0.87644 0.88693 0.89080 0.89688 0.89243 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.64 15 2 C 0.07 2.11 5.47 -17.82 -0.10 2.02 15 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 15 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 15 7 C -0.53 -15.12 9.66 -34.44 -0.33 -15.45 15 8 H 0.08 2.30 7.99 -52.48 -0.42 1.89 15 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.36 15 10 C 0.08 1.72 5.40 37.16 0.20 1.92 15 11 O -0.35 -6.93 10.22 -39.25 -0.40 -7.34 15 12 C 0.45 7.85 7.33 36.01 0.26 8.11 15 13 O -0.50 -9.40 15.63 -18.75 -0.29 -9.70 15 14 C 0.10 1.31 2.04 -90.96 -0.19 1.12 15 15 F -0.17 -2.46 17.23 2.25 0.04 -2.42 15 16 C -0.14 -1.45 7.54 -25.82 -0.19 -1.64 15 17 C -0.14 -1.09 8.07 -25.82 -0.21 -1.29 15 18 C -0.14 -1.40 7.33 -25.92 -0.19 -1.59 15 19 H 0.27 7.57 8.31 -40.82 -0.34 7.23 15 20 H 0.03 0.72 7.20 -51.93 -0.37 0.35 15 21 H 0.02 0.59 7.57 -51.93 -0.39 0.19 15 22 H 0.07 1.44 8.13 -51.93 -0.42 1.01 15 23 H 0.07 1.47 8.13 -51.93 -0.42 1.05 15 24 H 0.11 1.00 8.09 -51.93 -0.42 0.58 15 25 H 0.09 0.88 8.14 -51.93 -0.42 0.45 15 26 H 0.09 0.65 8.14 -51.93 -0.42 0.22 15 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 15 28 H 0.09 0.82 8.14 -51.93 -0.42 0.39 15 29 H 0.11 1.19 7.40 -51.93 -0.38 0.80 15 LS Contribution 257.91 15.07 3.89 3.89 Total: -1.00 -31.47 257.91 -5.22 -36.69 By element: Atomic # 1 Polarization: -0.53 SS G_CDS: -3.69 Total: -4.22 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -0.87 Total: -7.15 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 0.77 Total: -26.64 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.69 Total: -17.03 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.47 -5.22 -36.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308415537.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.326 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds