Wall clock time and date at job start Mon Mar 30 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48501 * 109.47230 * 270.00036 * 3 2 1 5 5 H 1.48509 * 109.46773 * 29.99728 * 3 2 1 6 6 H 1.48499 * 109.47461 * 149.99687 * 3 2 1 7 7 C 1.37876 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00113 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00028 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47491 * 180.02562 * 9 7 2 11 11 O 1.45191 * 109.47682 * 179.97438 * 10 9 7 12 12 C 1.34227 * 117.00289 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00236 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00228 * 179.97438 * 12 11 10 15 15 F 1.39901 * 112.84519 * 45.33700 * 14 12 11 16 16 C 1.53780 * 113.61555 * 274.14513 * 14 12 11 17 17 C 1.53962 * 87.01608 * 220.04475 * 16 14 12 18 18 C 1.53780 * 87.11158 * 25.36395 * 17 16 14 19 19 H 0.96996 * 119.99851 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47537 * 60.00060 * 9 7 2 21 21 H 1.08996 * 109.47054 * 299.99801 * 9 7 2 22 22 H 1.09001 * 109.47121 * 59.99184 * 10 9 7 23 23 H 1.09005 * 109.46964 * 299.99864 * 10 9 7 24 24 H 1.09000 * 113.61461 * 334.56184 * 16 14 12 25 25 H 1.08995 * 113.61894 * 105.46921 * 16 14 12 26 26 H 1.08997 * 113.53543 * 270.80721 * 17 16 14 27 27 H 1.08998 * 113.73879 * 139.94319 * 17 16 14 28 28 H 1.09005 * 113.61134 * 220.09229 * 18 17 16 29 29 H 1.09002 * 113.69315 * 89.19485 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 8 5.4736 -2.6365 0.0009 12 6 6.0830 -3.8324 0.0014 13 8 5.4251 -4.8458 0.0013 14 6 7.5880 -3.9113 0.0008 15 9 8.1782 -3.0341 0.9170 16 6 8.2079 -3.8426 -1.4049 17 6 9.1994 -4.9217 -0.9327 18 6 8.1296 -5.3480 0.0866 19 1 -0.4850 0.8400 -0.0004 20 1 3.8746 -0.6799 0.8911 21 1 3.8752 -0.6804 -0.8888 22 1 3.6586 -3.1502 -0.8892 23 1 3.6580 -3.1505 0.8908 24 1 7.5375 -4.1813 -2.1948 25 1 8.6776 -2.8849 -1.6287 26 1 10.1008 -4.5143 -0.4750 27 1 9.4127 -5.6810 -1.6850 28 1 8.5362 -5.6036 1.0651 29 1 7.4371 -6.0991 -0.2935 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308415537.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:22 Heat of formation + Delta-G solvation = -141.073809 kcal Electronic energy + Delta-G solvation = -14364.265430 eV Core-core repulsion = 11587.792882 eV Total energy + Delta-G solvation = -2776.472547 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.09652 -41.70705 -38.95696 -37.55433 -35.44672 -32.87479 -28.66196 -27.00402 -26.73903 -23.14244 -22.49956 -20.67012 -19.59705 -18.87490 -18.04564 -17.82816 -16.81830 -16.36840 -16.23020 -15.81349 -15.14846 -15.04486 -14.65117 -14.26527 -13.62944 -13.40285 -13.25300 -12.74048 -12.63051 -12.55491 -12.44368 -11.96726 -11.85464 -11.60406 -11.55594 -11.50282 -11.21335 -10.84210 -8.37453 -6.46051 0.78531 1.36023 1.37847 1.42882 1.50941 2.31943 2.89750 2.95730 2.97237 3.28705 3.56850 3.62034 4.08801 4.09084 4.41282 4.54699 4.56030 4.63234 4.79929 4.83062 4.95317 5.00608 5.22197 5.30700 5.34854 5.46876 6.11728 6.42097 6.59702 7.19280 8.78512 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.057139 B = 0.006192 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.911948 B = 4520.528644 C = 4795.432148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.248 1.248 7 C -0.544 4.544 8 H 0.037 0.963 9 C -0.004 4.004 10 C 0.089 3.911 11 O -0.357 6.357 12 C 0.447 3.553 13 O -0.517 6.517 14 C 0.084 3.916 15 F -0.176 7.176 16 C -0.142 4.142 17 C -0.118 4.118 18 C -0.135 4.135 19 H 0.271 0.729 20 H 0.032 0.968 21 H 0.036 0.964 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.888 -7.187 -2.471 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.171 1.171 7 C -0.582 4.582 8 H 0.056 0.944 9 C -0.041 4.041 10 C 0.016 3.984 11 O -0.273 6.273 12 C 0.289 3.711 13 O -0.406 6.406 14 C 0.064 3.936 15 F -0.157 7.157 16 C -0.180 4.180 17 C -0.155 4.155 18 C -0.173 4.173 19 H 0.080 0.920 20 H 0.051 0.949 21 H 0.054 0.946 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.127 0.873 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.128 0.872 28 H 0.118 0.882 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 20.505 -7.335 -2.440 21.914 hybrid contribution -0.779 0.715 0.316 1.104 sum 19.726 -6.620 -2.124 20.915 Atomic orbital electron populations 1.70032 1.08260 1.28698 1.51187 1.25931 0.95673 1.03516 0.93345 0.85616 0.79414 0.77775 0.79648 1.18547 1.20431 1.17138 1.21089 0.90511 0.93924 1.52652 0.94448 1.19471 0.94349 0.91847 0.98468 1.23079 0.73649 1.00160 1.01512 1.86540 1.25018 1.33287 1.82431 1.24530 0.92706 0.81641 0.72244 1.90643 1.67148 1.36948 1.45819 1.22382 0.82793 0.94256 0.94147 1.92906 1.83943 1.70832 1.67992 1.23696 0.99041 1.03482 0.91750 1.22902 0.96327 0.97927 0.98336 1.23632 0.98919 0.91161 1.03542 0.91954 0.94933 0.94598 0.91665 0.92301 0.87276 0.87726 0.87732 0.87201 0.88236 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.71 13.96 21.45 0.30 -58.41 15 2 C 0.01 0.80 5.47 84.65 0.46 1.26 15 3 Si 0.95 43.82 27.47 68.60 1.88 45.70 15 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 6 H -0.25 -10.73 6.54 99.48 0.65 -10.08 15 7 C -0.54 -31.77 9.66 25.60 0.25 -31.53 15 8 H 0.04 2.39 7.99 -2.91 -0.02 2.37 15 9 C 0.00 -0.19 4.42 29.85 0.13 -0.06 15 10 C 0.09 3.90 5.40 71.98 0.39 4.29 15 11 O -0.36 -13.97 10.22 -51.39 -0.53 -14.49 15 12 C 0.45 15.22 7.33 71.24 0.52 15.74 15 13 O -0.52 -19.53 15.63 21.98 0.34 -19.19 15 14 C 0.08 2.08 2.04 -11.01 -0.02 2.05 15 15 F -0.18 -4.84 17.23 44.97 0.77 -4.06 15 16 C -0.14 -2.45 7.54 31.18 0.24 -2.21 15 17 C -0.12 -1.41 8.07 31.18 0.25 -1.16 15 18 C -0.14 -2.40 7.33 31.12 0.23 -2.18 15 19 H 0.27 15.62 8.31 -92.71 -0.77 14.85 15 20 H 0.03 1.56 7.20 -2.39 -0.02 1.54 15 21 H 0.04 1.66 7.57 -2.39 -0.02 1.64 15 22 H 0.06 2.84 8.13 -2.39 -0.02 2.82 15 23 H 0.06 2.64 8.13 -2.38 -0.02 2.62 15 24 H 0.11 1.80 8.09 -2.39 -0.02 1.78 15 25 H 0.10 1.61 8.14 -2.39 -0.02 1.59 15 26 H 0.10 1.03 8.14 -2.39 -0.02 1.01 15 27 H 0.11 0.85 8.14 -2.39 -0.02 0.83 15 28 H 0.10 1.57 8.14 -2.38 -0.02 1.55 15 29 H 0.11 2.08 7.40 -2.39 -0.02 2.06 15 Total: -1.00 -68.37 257.91 6.30 -62.06 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: 1.08 Total: 2.17 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 2.45 Total: -13.79 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.30 Total: -58.41 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.18 Total: -33.68 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.77 Total: -4.06 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Total: -68.37 6.30 -62.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308415537.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.011 kcal (2) G-P(sol) polarization free energy of solvation -68.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds