Wall clock time and date at job start Mon Mar 30 2020 03:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48502 * 109.46707 * 240.00050 * 3 2 1 5 5 H 1.48498 * 109.47177 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47429 * 119.99912 * 3 2 1 7 7 C 1.37881 * 119.99502 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99629 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00276 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47345 * 179.97438 * 9 7 2 11 11 C 1.34768 * 120.00284 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00125 * 0.02562 * 11 10 9 13 13 C 1.50705 * 120.00136 * 180.02562 * 11 10 9 14 14 H 1.09002 * 109.46960 * 14.99868 * 13 11 10 15 15 F 1.39901 * 109.46752 * 255.00253 * 13 11 10 16 16 C 1.52996 * 109.47216 * 135.00213 * 13 11 10 17 17 C 1.53935 * 113.73564 * 86.23404 * 16 13 11 18 18 N 1.48296 * 86.06285 * 138.12918 * 17 16 13 19 19 C 1.47961 * 90.75572 * 335.31010 * 18 17 16 20 20 H 0.97005 * 119.99652 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47129 * 60.00060 * 9 7 2 22 22 H 1.09001 * 109.47280 * 299.99835 * 9 7 2 23 23 H 0.97005 * 119.99803 * 0.02562 * 10 9 7 24 24 H 1.09002 * 112.93723 * 314.66582 * 16 13 11 25 25 H 1.09001 * 113.76001 * 252.50503 * 17 16 13 26 26 H 1.09000 * 113.75996 * 23.86319 * 17 16 13 27 27 H 1.00893 * 111.00363 * 88.19784 * 18 17 16 28 28 H 1.09007 * 113.75652 * 270.36911 * 19 18 17 29 29 H 1.08992 * 113.86038 * 139.01836 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8833 0.0011 12 8 0.5612 -5.1050 0.0011 13 6 2.7329 -6.0289 0.0016 14 1 3.7235 -5.6599 0.2675 15 9 2.7765 -6.6056 -1.2722 16 6 2.2889 -7.0789 1.0220 17 6 1.2802 -8.0984 0.4629 18 7 2.0604 -9.1212 1.2007 19 6 3.2643 -8.2620 1.1579 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 3.1566 -3.4355 0.0009 24 1 1.9905 -6.6445 1.9762 25 1 0.2655 -7.9630 0.8375 26 1 1.3234 -8.2102 -0.6205 27 1 1.7218 -9.2223 2.1457 28 1 3.8866 -8.4216 0.2772 29 1 3.8350 -8.2562 2.0864 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388164251.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:57 Heat of formation + Delta-G solvation = -82.914649 kcal Electronic energy + Delta-G solvation = -14410.462903 eV Core-core repulsion = 11668.805078 eV Total energy + Delta-G solvation = -2741.657826 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.101 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.00612 -40.76402 -39.86044 -36.25810 -34.44594 -31.73843 -29.29591 -26.99179 -26.19580 -24.30207 -21.75854 -21.02799 -19.38432 -17.97061 -17.92607 -17.29803 -17.28441 -16.65995 -16.14920 -15.65735 -15.16394 -14.46909 -14.14723 -13.92589 -13.83385 -13.73264 -13.56485 -13.10893 -12.97699 -12.69750 -12.26530 -11.99518 -11.77818 -11.54972 -10.82771 -10.76356 -9.97311 -9.53837 -8.31810 -6.49015 1.42222 1.43070 1.46897 1.54880 2.12362 2.40341 2.93570 3.03339 3.25608 3.40903 3.66144 3.73650 4.10184 4.18754 4.51615 4.68824 4.76635 4.77851 4.95173 5.03684 5.17550 5.17831 5.38059 5.58620 5.79315 6.35709 6.59493 6.71036 7.16440 7.30815 8.80050 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.068858 B = 0.005818 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.537683 B = 4811.218424 C = 4936.285620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.263 3.737 10 N -0.696 5.696 11 C 0.472 3.528 12 O -0.580 6.580 13 C 0.099 3.901 14 H 0.144 0.856 15 F -0.196 7.196 16 C -0.175 4.175 17 C 0.027 3.973 18 N -0.665 5.665 19 C 0.039 3.961 20 H 0.269 0.731 21 H -0.012 1.012 22 H -0.006 1.006 23 H 0.412 0.588 24 H 0.112 0.888 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.346 0.654 28 H 0.104 0.896 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.285 -11.678 3.559 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.597 4.597 8 H 0.104 0.896 9 C 0.141 3.859 10 N -0.346 5.346 11 C 0.256 3.744 12 O -0.460 6.460 13 C 0.059 3.941 14 H 0.161 0.839 15 F -0.177 7.177 16 C -0.195 4.195 17 C -0.103 4.103 18 N -0.292 5.292 19 C -0.090 4.090 20 H 0.078 0.922 21 H 0.006 0.994 22 H 0.012 0.988 23 H 0.248 0.752 24 H 0.130 0.870 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.162 0.838 28 H 0.122 0.878 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.413 -12.396 3.001 15.852 hybrid contribution -0.198 1.929 0.393 1.979 sum 9.216 -10.467 3.394 14.353 Atomic orbital electron populations 1.70131 1.08296 1.28725 1.49743 1.26073 0.95774 1.03948 0.93748 0.85197 0.77906 0.76513 0.79565 1.18726 1.21189 1.18441 1.21587 0.94420 0.90437 1.53242 0.89566 1.18627 0.88702 0.84175 0.94423 1.46311 1.11620 1.05400 1.71224 1.21750 0.90181 0.85369 0.77107 1.90666 1.18899 1.85377 1.51088 1.21585 1.00946 0.90862 0.80706 0.83874 1.92829 1.97640 1.85514 1.41715 1.24903 0.99698 0.95712 0.99217 1.23556 0.96979 0.89207 1.00559 1.65142 1.04466 1.40391 1.19216 1.23765 0.93587 0.87028 1.04627 0.92186 0.99411 0.98813 0.75174 0.86984 0.91359 0.89138 0.83826 0.87774 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.46 13.29 21.45 0.28 -55.18 15 2 C 0.00 0.24 5.46 84.65 0.46 0.70 15 3 Si 0.99 41.46 29.54 68.60 2.03 43.49 15 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 15 5 H -0.29 -12.03 7.11 99.48 0.71 -11.32 15 6 H -0.26 -10.27 7.11 99.48 0.71 -9.56 15 7 C -0.56 -29.73 9.28 25.60 0.24 -29.49 15 8 H 0.09 4.09 7.60 -2.91 -0.02 4.06 15 9 C 0.26 14.16 5.43 85.63 0.46 14.62 15 10 N -0.70 -28.34 5.55 -466.80 -2.59 -30.93 15 11 C 0.47 18.30 7.16 87.66 0.63 18.93 15 12 O -0.58 -27.98 16.41 -3.05 -0.05 -28.03 15 13 C 0.10 2.62 3.77 29.85 0.11 2.73 15 14 H 0.14 2.55 7.99 -2.39 -0.02 2.53 15 15 F -0.20 -5.84 15.55 44.97 0.70 -5.14 15 16 C -0.18 -4.02 3.48 -10.15 -0.04 -4.06 15 17 C 0.03 0.70 8.05 86.34 0.69 1.39 15 18 N -0.66 -13.87 8.56 -523.30 -4.48 -18.35 15 19 C 0.04 0.67 8.41 86.41 0.73 1.40 15 20 H 0.27 15.03 8.31 -92.70 -0.77 14.26 15 21 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 15 22 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 15 23 H 0.41 13.42 8.21 -92.70 -0.76 12.66 15 24 H 0.11 2.53 8.13 -2.39 -0.02 2.51 15 25 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 26 H 0.09 2.64 7.05 -2.39 -0.02 2.62 15 27 H 0.35 5.93 8.89 -89.70 -0.80 5.13 15 28 H 0.10 1.76 8.01 -2.38 -0.02 1.75 15 29 H 0.11 1.23 8.14 -2.39 -0.02 1.21 15 Total: -1.00 -69.93 258.02 -1.20 -71.13 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -0.38 Total: 16.78 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 3.29 Total: 6.23 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -6.79 Total: -104.46 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.05 Total: -28.03 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.70 Total: -5.14 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -69.93 -1.20 -71.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388164251.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.782 kcal (2) G-P(sol) polarization free energy of solvation -69.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds