Wall clock time and date at job start Mon Mar 30 2020 02:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31275 * 1 3 3 Si 1.86802 * 120.00027 * 2 1 4 4 H 1.48505 * 109.46765 * 274.98069 * 3 2 1 5 5 H 1.48495 * 109.47067 * 34.98014 * 3 2 1 6 6 H 1.48494 * 109.47060 * 154.98367 * 3 2 1 7 7 C 1.39019 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99818 * 185.92040 * 7 2 1 9 9 N 1.37313 * 119.99688 * 5.92101 * 7 2 1 10 10 C 1.36007 * 125.94667 * 174.41381 * 9 7 2 11 11 C 1.36491 * 107.44186 * 180.09817 * 10 9 7 12 12 C 1.48255 * 126.20994 * 179.89194 * 11 10 9 13 13 C 1.39596 * 120.11631 * 184.68848 * 12 11 10 14 14 N 1.31930 * 119.85832 * 179.74566 * 13 12 11 15 15 C 1.32257 * 120.10103 * 0.54102 * 14 13 12 16 16 C 1.38331 * 120.24580 * 359.48351 * 15 14 13 17 17 N 1.32093 * 120.14039 * 0.23164 * 16 15 14 18 18 C 1.41204 * 107.56957 * 359.63597 * 11 10 9 19 19 N 1.30697 * 108.26843 * 0.22157 * 18 11 10 20 20 H 0.96993 * 119.99770 * 359.97438 * 1 2 3 21 21 H 1.07996 * 126.27583 * 359.95933 * 10 9 7 22 22 H 1.08000 * 120.06621 * 0.03737 * 13 12 11 23 23 H 1.08004 * 119.87432 * 179.76448 * 15 14 13 24 24 H 1.08003 * 119.93380 * 180.25610 * 16 15 14 25 25 H 1.08001 * 125.86878 * 180.22650 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.3890 2.1071 -1.3949 5 1 1.5008 2.6200 0.8026 6 1 3.5930 1.4121 0.5920 7 6 2.0079 -1.2039 -0.0005 8 1 3.0835 -1.2064 0.0959 9 7 1.3267 -2.3898 -0.1237 10 6 1.8868 -3.6233 -0.2457 11 6 0.8686 -4.5269 -0.3443 12 6 1.0119 -5.9948 -0.4951 13 6 -0.1177 -6.7933 -0.6826 14 7 0.0162 -8.0984 -0.8212 15 6 1.2168 -8.6510 -0.7720 16 6 2.3390 -7.8639 -0.5859 17 7 2.2166 -6.5555 -0.4516 18 6 -0.3459 -3.8104 -0.2705 19 7 -0.0652 -2.5407 -0.1394 20 1 -0.4849 0.8400 0.0004 21 1 2.9433 -3.8464 -0.2638 22 1 -1.0987 -6.3429 -0.7187 23 1 1.3218 -9.7203 -0.8822 24 1 3.3174 -8.3200 -0.5507 25 1 -1.3366 -4.2380 -0.3148 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409437714.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:45 Heat of formation + Delta-G solvation = 121.282704 kcal Electronic energy + Delta-G solvation = -13204.376322 eV Core-core repulsion = 10798.802040 eV Total energy + Delta-G solvation = -2405.574283 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.071 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.42694 -39.42825 -33.99966 -33.55034 -31.75024 -30.40221 -28.11767 -25.55809 -23.94196 -23.27813 -20.54922 -19.48667 -17.80105 -16.50928 -16.45417 -15.64234 -15.28263 -14.33132 -14.26591 -13.37065 -13.26648 -13.08548 -12.25179 -11.76685 -11.51080 -11.37107 -11.04414 -10.98995 -10.77458 -10.60061 -9.77257 -9.08593 -9.07237 -8.51625 -8.35156 -7.12417 -6.75789 -4.45348 1.24798 1.66438 2.87638 2.97400 3.02755 3.44249 3.70018 3.84903 4.41519 4.61253 4.71756 4.82493 4.86557 5.07119 5.34952 5.72649 5.88676 6.00477 6.16915 6.47030 6.68226 6.95547 7.04450 7.24236 7.61932 7.83041 7.96730 8.40132 8.45600 9.14287 9.37673 10.20284 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.078453 B = 0.006592 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.815480 B = 4246.658373 C = 4588.204654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.048 3.952 3 Si 0.938 3.062 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.325 4.325 8 H 0.122 0.878 9 N -0.142 5.142 10 C -0.011 4.011 11 C -0.256 4.256 12 C 0.215 3.785 13 C 0.026 3.974 14 N -0.434 5.434 15 C -0.017 4.017 16 C 0.064 3.936 17 N -0.466 5.466 18 C 0.001 3.999 19 N -0.262 5.262 20 H 0.278 0.722 21 H 0.156 0.844 22 H 0.162 0.838 23 H 0.155 0.845 24 H 0.158 0.842 25 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.897 -6.656 -0.755 7.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.170 4.170 3 Si 0.761 3.239 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.457 4.457 8 H 0.139 0.861 9 N 0.097 4.903 10 C -0.165 4.165 11 C -0.272 4.272 12 C 0.077 3.923 13 C -0.138 4.138 14 N -0.148 5.148 15 C -0.175 4.175 16 C -0.097 4.097 17 N -0.182 5.182 18 C -0.179 4.179 19 N -0.087 5.087 20 H 0.088 0.912 21 H 0.173 0.827 22 H 0.180 0.820 23 H 0.172 0.828 24 H 0.175 0.825 25 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.214 -5.238 -0.624 5.721 hybrid contribution 0.758 -0.246 -0.083 0.801 sum 2.972 -5.484 -0.708 6.278 Atomic orbital electron populations 1.70184 1.06300 1.28474 1.34197 1.25713 0.95750 1.00582 0.94934 0.85751 0.79573 0.79516 0.79058 1.19424 1.19931 1.18541 1.20079 0.92499 0.80683 1.52450 0.86067 1.44874 1.03867 1.04628 1.36960 1.22114 0.98287 0.84612 1.11497 1.17835 0.93444 0.88900 1.27015 1.20219 0.88577 0.93757 0.89716 1.23496 1.00114 0.89461 1.00751 1.68213 1.25910 1.12348 1.08337 1.23312 0.89346 1.01178 1.03693 1.23566 0.99942 0.90513 0.95653 1.68542 1.25760 1.11267 1.12652 1.23751 0.97170 0.92023 1.04963 1.78128 0.90843 1.15120 1.24569 0.91151 0.82653 0.82043 0.82754 0.82523 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.28 11.83 55.50 0.66 -19.63 15 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 15 3 Si 0.94 18.18 29.56 -169.99 -5.02 13.16 15 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 6 H -0.26 -4.87 7.11 56.52 0.40 -4.46 15 7 C -0.33 -8.33 10.23 -14.81 -0.15 -8.48 15 8 H 0.12 2.80 7.84 -52.49 -0.41 2.39 15 9 N -0.14 -3.75 3.72 -11.33 -0.04 -3.79 15 10 C -0.01 -0.26 11.19 -16.33 -0.18 -0.44 15 11 C -0.26 -5.79 6.06 -105.28 -0.64 -6.43 15 12 C 0.22 4.31 6.76 -82.76 -0.56 3.75 15 13 C 0.03 0.46 10.77 -17.00 -0.18 0.28 15 14 N -0.43 -7.40 10.49 -12.77 -0.13 -7.53 15 15 C -0.02 -0.25 11.21 -17.33 -0.19 -0.44 15 16 C 0.06 0.97 11.22 -17.41 -0.20 0.78 15 17 N -0.47 -8.87 10.23 -9.59 -0.10 -8.96 15 18 C 0.00 0.03 11.42 -16.91 -0.19 -0.16 15 19 N -0.26 -7.03 10.38 30.88 0.32 -6.71 15 20 H 0.28 6.70 8.31 -40.82 -0.34 6.36 15 21 H 0.16 3.39 8.06 -52.49 -0.42 2.97 15 22 H 0.16 2.57 7.08 -52.49 -0.37 2.19 15 23 H 0.16 1.65 8.06 -52.48 -0.42 1.23 15 24 H 0.16 1.74 8.06 -52.48 -0.42 1.31 15 25 H 0.16 3.05 7.37 -52.49 -0.39 2.66 15 LS Contribution 236.63 15.07 3.57 3.57 Total: -1.00 -30.21 236.63 -4.72 -34.93 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -1.57 Total: 5.03 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.39 Total: -10.05 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.70 Total: -46.63 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.02 Total: 13.16 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.21 -4.72 -34.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409437714.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.215 kcal (2) G-P(sol) polarization free energy of solvation -30.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds