Wall clock time and date at job start Mon Mar 30 2020 02:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31275 * 1 3 3 Si 1.86802 * 120.00027 * 2 1 4 4 H 1.48505 * 109.46765 * 274.98069 * 3 2 1 5 5 H 1.48495 * 109.47067 * 34.98014 * 3 2 1 6 6 H 1.48494 * 109.47060 * 154.98367 * 3 2 1 7 7 C 1.39019 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99818 * 185.92040 * 7 2 1 9 9 N 1.37313 * 119.99688 * 5.92101 * 7 2 1 10 10 C 1.36007 * 125.94667 * 174.41381 * 9 7 2 11 11 C 1.36491 * 107.44186 * 180.09817 * 10 9 7 12 12 C 1.48255 * 126.20994 * 179.89194 * 11 10 9 13 13 C 1.39596 * 120.11631 * 184.68848 * 12 11 10 14 14 N 1.31930 * 119.85832 * 179.74566 * 13 12 11 15 15 C 1.32257 * 120.10103 * 0.54102 * 14 13 12 16 16 C 1.38331 * 120.24580 * 359.48351 * 15 14 13 17 17 N 1.32093 * 120.14039 * 0.23164 * 16 15 14 18 18 C 1.41204 * 107.56957 * 359.63597 * 11 10 9 19 19 N 1.30697 * 108.26843 * 0.22157 * 18 11 10 20 20 H 0.96993 * 119.99770 * 359.97438 * 1 2 3 21 21 H 1.07996 * 126.27583 * 359.95933 * 10 9 7 22 22 H 1.08000 * 120.06621 * 0.03737 * 13 12 11 23 23 H 1.08004 * 119.87432 * 179.76448 * 15 14 13 24 24 H 1.08003 * 119.93380 * 180.25610 * 16 15 14 25 25 H 1.08001 * 125.86878 * 180.22650 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.3890 2.1071 -1.3949 5 1 1.5008 2.6200 0.8026 6 1 3.5930 1.4121 0.5920 7 6 2.0079 -1.2039 -0.0005 8 1 3.0835 -1.2064 0.0959 9 7 1.3267 -2.3898 -0.1237 10 6 1.8868 -3.6233 -0.2457 11 6 0.8686 -4.5269 -0.3443 12 6 1.0119 -5.9948 -0.4951 13 6 -0.1177 -6.7933 -0.6826 14 7 0.0162 -8.0984 -0.8212 15 6 1.2168 -8.6510 -0.7720 16 6 2.3390 -7.8639 -0.5859 17 7 2.2166 -6.5555 -0.4516 18 6 -0.3459 -3.8104 -0.2705 19 7 -0.0652 -2.5407 -0.1394 20 1 -0.4849 0.8400 0.0004 21 1 2.9433 -3.8464 -0.2638 22 1 -1.0987 -6.3429 -0.7187 23 1 1.3218 -9.7203 -0.8822 24 1 3.3174 -8.3200 -0.5507 25 1 -1.3366 -4.2380 -0.3148 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409437714.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:45 Heat of formation + Delta-G solvation = 100.613123 kcal Electronic energy + Delta-G solvation = -13205.272623 eV Core-core repulsion = 10798.802040 eV Total energy + Delta-G solvation = -2406.470583 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.071 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.91247 -41.10605 -35.70694 -35.01324 -33.29418 -32.16114 -29.79693 -27.29960 -25.33341 -24.76368 -22.34740 -21.20634 -19.54107 -17.92080 -17.80825 -17.38580 -16.72820 -15.84535 -15.75590 -15.11232 -14.99436 -14.52922 -13.70066 -13.44623 -13.19392 -12.96062 -12.77575 -12.39479 -12.17503 -12.08042 -11.44304 -10.90481 -10.59529 -10.21454 -9.86168 -8.83854 -8.56165 -6.35834 -0.10279 0.32042 1.29183 1.38440 1.56107 1.74845 2.08647 2.20962 2.69277 2.99076 3.17366 3.38469 3.54545 3.74941 4.05512 4.38235 4.39591 4.58944 4.75374 4.86997 4.92482 5.15220 5.48831 5.67299 5.83241 6.12058 6.54506 6.65349 7.05536 7.32323 7.54266 8.43269 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.078453 B = 0.006592 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.815480 B = 4246.658373 C = 4588.204654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.001 3.999 3 Si 1.018 2.982 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.247 1.247 7 C -0.363 4.363 8 H 0.135 0.865 9 N -0.168 5.168 10 C -0.022 4.022 11 C -0.252 4.252 12 C 0.184 3.816 13 C 0.025 3.975 14 N -0.448 5.448 15 C 0.009 3.991 16 C 0.063 3.937 17 N -0.486 5.486 18 C -0.008 4.008 19 N -0.309 5.309 20 H 0.280 0.720 21 H 0.168 0.832 22 H 0.174 0.826 23 H 0.203 0.797 24 H 0.202 0.798 25 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.093 -8.739 -0.999 9.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.212 4.212 3 Si 0.836 3.164 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.170 1.170 7 C -0.493 4.493 8 H 0.153 0.847 9 N 0.068 4.932 10 C -0.175 4.175 11 C -0.267 4.267 12 C 0.047 3.953 13 C -0.136 4.136 14 N -0.162 5.162 15 C -0.151 4.151 16 C -0.098 4.098 17 N -0.203 5.203 18 C -0.187 4.187 19 N -0.135 5.135 20 H 0.090 0.910 21 H 0.185 0.815 22 H 0.191 0.809 23 H 0.220 0.780 24 H 0.219 0.781 25 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.400 -7.329 -0.866 8.126 hybrid contribution 0.449 -0.071 -0.043 0.457 sum 3.849 -7.401 -0.909 8.391 Atomic orbital electron populations 1.70323 1.08217 1.29505 1.36185 1.26832 0.96535 1.04099 0.93688 0.84595 0.78504 0.74169 0.79104 1.19008 1.19608 1.17021 1.20656 0.93458 0.81337 1.53877 0.84741 1.45087 1.03866 1.05432 1.38780 1.22525 0.99279 0.84540 1.11167 1.18115 0.92707 0.90489 1.25376 1.20030 0.89941 0.92661 0.92658 1.23608 1.00033 0.89869 1.00119 1.68345 1.27300 1.11604 1.08998 1.24189 0.88207 1.03340 0.99330 1.24336 1.02321 0.89024 0.94122 1.68460 1.25613 1.13605 1.12582 1.24242 0.98835 0.91254 1.04356 1.78008 0.91767 1.17198 1.26515 0.90961 0.81476 0.80917 0.77993 0.78109 0.79247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.99 11.83 21.67 0.26 -44.73 15 2 C 0.00 0.07 5.50 84.96 0.47 0.54 15 3 Si 1.02 37.83 29.56 68.60 2.03 39.86 15 4 H -0.27 -9.58 7.11 99.48 0.71 -8.88 15 5 H -0.27 -9.81 7.11 99.48 0.71 -9.11 15 6 H -0.25 -8.48 7.11 99.48 0.71 -7.77 15 7 C -0.36 -19.22 10.23 84.02 0.86 -18.36 15 8 H 0.14 6.38 7.84 -2.91 -0.02 6.36 15 9 N -0.17 -9.26 3.72 -189.76 -0.71 -9.96 15 10 C -0.02 -1.08 11.19 83.64 0.94 -0.14 15 11 C -0.25 -11.50 6.06 -20.29 -0.12 -11.62 15 12 C 0.18 7.19 6.76 41.97 0.28 7.48 15 13 C 0.02 0.84 10.77 85.01 0.92 1.75 15 14 N -0.45 -13.75 10.49 -194.33 -2.04 -15.79 15 15 C 0.01 0.22 11.21 84.65 0.95 1.17 15 16 C 0.06 1.64 11.22 84.68 0.95 2.59 15 17 N -0.49 -17.44 10.23 -184.26 -1.88 -19.33 15 18 C -0.01 -0.36 11.42 85.59 0.98 0.62 15 19 N -0.31 -17.28 10.38 -56.20 -0.58 -17.86 15 20 H 0.28 14.10 8.31 -92.71 -0.77 13.33 15 21 H 0.17 7.46 8.06 -2.91 -0.02 7.44 15 22 H 0.17 5.27 7.08 -2.91 -0.02 5.25 15 23 H 0.20 2.95 8.06 -2.91 -0.02 2.93 15 24 H 0.20 3.30 8.06 -2.91 -0.02 3.28 15 25 H 0.19 7.31 7.37 -2.91 -0.02 7.29 15 Total: -1.00 -68.18 236.63 4.50 -63.68 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 1.22 Total: 20.13 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 6.21 Total: -15.98 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -4.96 Total: -107.68 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Total: -68.18 4.50 -63.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409437714.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.289 kcal (2) G-P(sol) polarization free energy of solvation -68.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds