Wall clock time and date at job start Mon Mar 30 2020 02:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31250 * 1 3 3 Si 1.86809 * 119.99491 * 2 1 4 4 H 1.48501 * 109.46667 * 180.27617 * 3 2 1 5 5 H 1.48500 * 109.47133 * 300.27423 * 3 2 1 6 6 H 1.48493 * 109.47037 * 60.27476 * 3 2 1 7 7 C 1.39045 * 120.00512 * 180.27900 * 2 1 3 8 8 H 1.07999 * 120.00141 * 179.72574 * 7 2 1 9 9 N 1.37184 * 119.99711 * 359.72055 * 7 2 1 10 10 C 1.36439 * 126.00331 * 180.02562 * 9 7 2 11 11 C 1.34915 * 107.84599 * 180.02562 * 10 9 7 12 12 C 1.41193 * 107.92959 * 0.02562 * 11 10 9 13 13 C 1.48165 * 125.94992 * 180.02562 * 12 11 10 14 14 C 1.39616 * 120.11399 * 179.72432 * 13 12 11 15 15 N 1.31953 * 119.85205 * 179.72891 * 14 13 12 16 16 C 1.32248 * 120.10199 * 0.54085 * 15 14 13 17 17 C 1.38435 * 120.24083 * 359.71228 * 16 15 14 18 18 N 1.32021 * 120.13930 * 0.02562 * 17 16 15 19 19 N 1.31846 * 108.09910 * 359.71372 * 12 11 10 20 20 H 0.97000 * 120.00598 * 359.72590 * 1 2 3 21 21 H 1.07994 * 126.07917 * 359.97438 * 10 9 7 22 22 H 1.08004 * 126.03468 * 179.97438 * 11 10 9 23 23 H 1.07992 * 120.07577 * 359.96804 * 14 13 12 24 24 H 1.07998 * 119.87934 * 179.68750 * 16 15 14 25 25 H 1.07997 * 119.92616 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2464 1.6179 0.0000 4 1 3.7064 1.3466 -0.0067 5 1 1.8826 2.3995 -1.2091 6 1 1.8926 2.3936 1.2158 7 6 2.0078 -1.2041 -0.0059 8 1 3.0878 -1.2040 -0.0103 9 7 1.3220 -2.3922 -0.0059 10 6 1.8769 -3.6386 -0.0107 11 6 0.8718 -4.5387 -0.0094 12 6 -0.3481 -3.8279 -0.0042 13 6 -1.7035 -4.4264 -0.0006 14 6 -2.8321 -3.6046 0.0104 15 7 -4.0368 -4.1431 0.0081 16 6 -4.1754 -5.4583 0.0062 17 6 -3.0591 -6.2770 0.0006 18 7 -1.8493 -5.7484 -0.0023 19 7 -0.0712 -2.5389 0.0039 20 1 -0.4851 0.8400 0.0040 21 1 2.9329 -3.8646 -0.0157 22 1 0.9812 -5.6131 -0.0128 23 1 -2.7195 -2.5306 0.0168 24 1 -5.1630 -5.8952 0.0094 25 1 -3.1782 -7.3504 -0.0004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409443735.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:11 Heat of formation + Delta-G solvation = 104.578734 kcal Electronic energy + Delta-G solvation = -13339.636744 eV Core-core repulsion = 10933.338122 eV Total energy + Delta-G solvation = -2406.298621 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.071 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.93349 -41.10967 -35.75287 -35.08264 -33.45673 -31.43741 -30.34168 -27.30934 -25.45878 -25.16371 -21.87537 -21.29559 -19.47181 -18.10298 -17.95015 -17.45489 -16.54038 -15.96883 -15.87145 -15.08848 -14.85002 -14.35572 -13.83365 -13.44044 -13.27033 -12.94774 -12.75838 -12.51128 -12.30140 -12.02860 -11.48834 -10.90436 -10.72788 -9.95180 -9.54201 -9.31434 -8.53503 -6.31869 -0.26917 0.19703 1.29049 1.40308 1.58880 1.75837 2.08890 2.17626 2.55969 3.02288 3.08964 3.29814 3.44009 3.64071 4.02655 4.27329 4.46691 4.59674 4.70607 4.82850 5.14000 5.23887 5.42697 5.59719 5.90100 6.10460 6.40412 6.66141 6.90834 7.38297 7.55085 8.46046 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.049660 B = 0.007932 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.703326 B = 3529.310518 C = 4083.169661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C -0.003 4.003 3 Si 1.018 2.982 4 H -0.243 1.243 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.351 4.351 8 H 0.142 0.858 9 N -0.163 5.163 10 C -0.072 4.072 11 C -0.249 4.249 12 C -0.029 4.029 13 C 0.170 3.830 14 C 0.043 3.957 15 N -0.454 5.454 16 C 0.032 3.968 17 C 0.065 3.935 18 N -0.459 5.459 19 N -0.283 5.283 20 H 0.280 0.720 21 H 0.185 0.815 22 H 0.145 0.855 23 H 0.150 0.850 24 H 0.215 0.785 25 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.394 -6.282 0.010 6.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.215 4.215 3 Si 0.837 3.163 4 H -0.165 1.165 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.483 4.483 8 H 0.160 0.840 9 N 0.067 4.933 10 C -0.216 4.216 11 C -0.281 4.281 12 C -0.180 4.180 13 C 0.033 3.967 14 C -0.117 4.117 15 N -0.168 5.168 16 C -0.130 4.130 17 C -0.098 4.098 18 N -0.175 5.175 19 N -0.119 5.119 20 H 0.090 0.910 21 H 0.202 0.798 22 H 0.163 0.837 23 H 0.167 0.833 24 H 0.232 0.768 25 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -3.012 -4.955 0.012 5.799 hybrid contribution 0.649 -0.018 -0.004 0.649 sum -2.363 -4.973 0.008 5.506 Atomic orbital electron populations 1.70320 1.08342 1.29400 1.36273 1.26841 0.96497 1.04177 0.94010 0.84538 0.79037 0.74387 0.78311 1.16539 1.19661 1.19641 1.20775 0.93162 0.81035 1.53355 0.84041 1.45235 1.03370 1.05451 1.39265 1.22750 1.00216 0.84295 1.14382 1.21106 0.90281 0.99524 1.17198 1.20386 0.92333 0.92454 1.12810 1.19501 0.91553 0.90026 0.95638 1.23456 0.88208 1.01475 0.98541 1.68405 1.24454 1.14981 1.08984 1.24532 1.02776 0.88985 0.96690 1.24560 0.87124 1.03984 0.94092 1.68330 1.27661 1.11088 1.10462 1.78337 0.91812 1.14438 1.27312 0.91050 0.79806 0.83695 0.83288 0.76809 0.76548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.35 11.80 21.67 0.26 -45.09 15 2 C 0.00 -0.13 5.50 84.97 0.47 0.34 15 3 Si 1.02 37.68 29.55 68.60 2.03 39.71 15 4 H -0.24 -8.11 7.11 99.48 0.71 -7.41 15 5 H -0.27 -9.88 7.11 99.48 0.71 -9.18 15 6 H -0.27 -9.87 7.11 99.48 0.71 -9.16 15 7 C -0.35 -18.32 10.24 84.05 0.86 -17.46 15 8 H 0.14 6.45 7.83 -2.91 -0.02 6.43 15 9 N -0.16 -9.02 3.73 -190.67 -0.71 -9.73 15 10 C -0.07 -3.42 11.43 83.21 0.95 -2.47 15 11 C -0.25 -11.94 10.55 22.23 0.23 -11.71 15 12 C -0.03 -1.51 7.02 42.51 0.30 -1.21 15 13 C 0.17 7.73 6.76 41.94 0.28 8.02 15 14 C 0.04 1.86 10.88 85.01 0.92 2.79 15 15 N -0.45 -16.51 10.49 -194.23 -2.04 -18.55 15 16 C 0.03 0.83 11.22 84.68 0.95 1.78 15 17 C 0.07 1.75 11.22 84.71 0.95 2.70 15 18 N -0.46 -17.51 10.24 -184.27 -1.89 -19.40 15 19 N -0.28 -16.39 10.06 -48.02 -0.48 -16.88 15 20 H 0.28 14.21 8.31 -92.71 -0.77 13.44 15 21 H 0.18 7.11 8.06 -2.91 -0.02 7.09 15 22 H 0.15 6.15 8.06 -2.91 -0.02 6.12 15 23 H 0.15 7.17 7.85 -2.91 -0.02 7.15 15 24 H 0.22 3.23 8.06 -2.91 -0.02 3.21 15 25 H 0.22 3.32 8.06 -2.91 -0.02 3.30 15 Total: -1.00 -70.47 238.22 4.30 -66.17 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 1.21 Total: 20.99 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 5.92 Total: -17.22 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -4.86 Total: -109.65 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -70.47 4.30 -66.17 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409443735.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.753 kcal (2) G-P(sol) polarization free energy of solvation -70.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds