Wall clock time and date at job start Mon Mar 30 2020 02:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.62676 * 335.00335 * 12 10 9 14 14 C 1.53254 * 109.62945 * 214.61167 * 12 10 9 15 15 N 1.46468 * 109.85774 * 178.29176 * 14 12 10 16 16 C 1.46467 * 112.55856 * 72.65333 * 15 14 12 17 17 C 1.53244 * 109.86393 * 287.34406 * 16 15 14 18 18 S 1.81892 * 109.63127 * 95.39813 * 12 10 9 19 19 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 20 20 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 21 21 H 1.08996 * 109.40573 * 298.40777 * 14 12 10 22 22 H 1.09000 * 109.40339 * 58.25561 * 14 12 10 23 23 H 1.00905 * 111.00188 * 307.54786 * 15 14 12 24 24 H 1.09002 * 109.40459 * 47.46854 * 16 15 14 25 25 H 1.09002 * 109.40384 * 167.30304 * 16 15 14 26 26 H 1.09005 * 109.63346 * 181.70623 * 17 16 15 27 27 H 1.09002 * 109.63089 * 302.29760 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 1 0.2551 -4.7147 0.4364 14 6 2.0156 -5.9026 0.8220 15 7 1.2677 -7.1614 0.8598 16 6 1.2975 -7.8714 -0.4209 17 6 0.4112 -7.1461 -1.4391 18 16 1.0772 -5.4732 -1.7032 19 1 -0.4850 0.8401 0.0004 20 1 0.3534 -2.3906 0.0024 21 1 2.9900 -6.0739 0.3645 22 1 2.1524 -5.5334 1.8384 23 1 0.3186 -7.0091 1.1667 24 1 2.3219 -7.9060 -0.7920 25 1 0.9288 -8.8875 -0.2803 26 1 0.4122 -7.6941 -2.3814 27 1 -0.6061 -7.0754 -1.0543 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575535445.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:04 Heat of formation + Delta-G solvation = -39.584869 kcal Electronic energy + Delta-G solvation = -12573.933033 eV Core-core repulsion = 10264.534209 eV Total energy + Delta-G solvation = -2309.398824 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.067 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.56447 -36.97697 -34.07379 -31.63320 -31.10582 -28.53570 -25.23594 -23.29519 -21.84973 -19.46512 -18.04964 -17.16064 -16.11679 -14.87247 -14.81272 -14.61097 -14.30699 -14.20058 -13.75657 -13.15570 -12.64678 -12.38547 -11.70385 -11.61411 -11.51278 -11.13463 -10.70645 -10.44905 -10.31021 -9.83973 -9.60395 -8.85733 -8.36136 -8.08095 -7.36197 -6.52630 -3.91445 1.70820 2.65951 3.15232 3.22310 3.28631 3.98440 4.05617 4.18996 4.73431 4.81728 4.99422 5.10839 5.21366 5.33774 5.40971 5.58310 5.77226 5.87441 6.15225 6.28517 6.93712 7.26504 7.45393 7.93152 8.47635 9.05604 9.40069 9.91595 10.64146 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.062235 B = 0.007455 C = 0.007196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.803207 B = 3755.112135 C = 3890.181364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.268 1.268 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.107 0.893 9 N -0.543 5.543 10 C 0.454 3.546 11 O -0.583 6.583 12 C -0.097 4.097 13 H 0.091 0.909 14 C 0.078 3.922 15 N -0.691 5.691 16 C 0.058 3.942 17 C -0.133 4.133 18 S -0.233 6.233 19 H 0.274 0.726 20 H 0.394 0.606 21 H 0.096 0.904 22 H 0.089 0.911 23 H 0.341 0.659 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.552 -11.061 -0.089 11.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.192 1.192 6 H -0.208 1.208 7 C -0.430 4.430 8 H 0.124 0.876 9 N -0.178 5.178 10 C 0.238 3.762 11 O -0.468 6.468 12 C -0.231 4.231 13 H 0.109 0.891 14 C -0.053 4.053 15 N -0.319 5.319 16 C -0.073 4.073 17 C -0.283 4.283 18 S -0.007 6.007 19 H 0.084 0.916 20 H 0.228 0.772 21 H 0.114 0.886 22 H 0.107 0.893 23 H 0.159 0.841 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.125 0.875 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.120 -10.747 -0.814 10.836 hybrid contribution -1.377 0.869 0.485 1.699 sum -2.497 -9.878 -0.329 10.194 Atomic orbital electron populations 1.69621 1.06078 1.28569 1.49024 1.25343 0.95669 0.99986 0.96745 0.85798 0.79313 0.80351 0.78525 1.20202 1.19201 1.20751 1.19796 0.93561 0.82006 1.47611 0.87569 1.41908 1.09349 1.04504 1.62021 1.18744 0.87793 0.83402 0.86248 1.90535 1.13195 1.86484 1.56589 1.24065 1.03284 1.00071 0.95691 0.89063 1.22078 0.97406 0.85433 1.00387 1.60161 1.19839 1.23506 1.28380 1.22220 1.00483 0.97205 0.87420 1.24321 1.02179 0.97008 1.04814 1.87481 1.85295 1.15684 1.12222 0.91560 0.77241 0.88585 0.89279 0.84107 0.89593 0.89850 0.87485 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.13 13.05 55.50 0.72 -23.40 15 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 15 3 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 15 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.27 -5.98 7.11 56.52 0.40 -5.57 15 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 15 8 H 0.11 3.09 7.16 -52.49 -0.38 2.72 15 9 N -0.54 -14.00 5.29 -10.96 -0.06 -14.06 15 10 C 0.45 10.99 6.81 -10.98 -0.07 10.91 15 11 O -0.58 -16.04 15.89 5.55 0.09 -15.95 15 12 C -0.10 -1.81 3.02 -27.75 -0.08 -1.89 15 13 H 0.09 1.55 8.11 -51.93 -0.42 1.13 15 14 C 0.08 1.28 5.34 -3.93 -0.02 1.26 15 15 N -0.69 -8.96 6.70 -114.14 -0.77 -9.72 15 16 C 0.06 0.67 6.42 -3.93 -0.03 0.64 15 17 C -0.13 -1.60 6.59 37.28 0.25 -1.36 15 18 S -0.23 -4.12 21.77 -107.50 -2.34 -6.46 15 19 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 20 H 0.39 9.82 7.88 -40.82 -0.32 9.50 15 21 H 0.10 1.75 7.69 -51.93 -0.40 1.35 15 22 H 0.09 1.47 8.14 -51.93 -0.42 1.04 15 23 H 0.34 3.93 8.65 -39.29 -0.34 3.59 15 24 H 0.09 1.07 7.92 -51.93 -0.41 0.66 15 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.11 1.11 8.14 -51.93 -0.42 0.69 15 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 15 LS Contribution 245.23 15.07 3.70 3.70 Total: -1.00 -30.33 245.23 -6.97 -37.31 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -3.09 Total: 11.13 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -0.20 Total: 1.66 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.10 Total: -47.19 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.09 Total: -15.95 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -2.34 Total: -6.46 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.33 -6.97 -37.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575535445.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.280 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds