Wall clock time and date at job start Mon Mar 30 2020 02:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.62676 * 335.00335 * 12 10 9 14 14 C 1.53254 * 109.62945 * 214.61167 * 12 10 9 15 15 N 1.46468 * 109.85774 * 178.29176 * 14 12 10 16 16 C 1.46467 * 112.55856 * 72.65333 * 15 14 12 17 17 C 1.53244 * 109.86393 * 287.34406 * 16 15 14 18 18 S 1.81892 * 109.63127 * 95.39813 * 12 10 9 19 19 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 20 20 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 21 21 H 1.08996 * 109.40573 * 298.40777 * 14 12 10 22 22 H 1.09000 * 109.40339 * 58.25561 * 14 12 10 23 23 H 1.00905 * 111.00188 * 307.54786 * 15 14 12 24 24 H 1.09002 * 109.40459 * 47.46854 * 16 15 14 25 25 H 1.09002 * 109.40384 * 167.30304 * 16 15 14 26 26 H 1.09005 * 109.63346 * 181.70623 * 17 16 15 27 27 H 1.09002 * 109.63089 * 302.29760 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 1 0.2551 -4.7147 0.4364 14 6 2.0156 -5.9026 0.8220 15 7 1.2677 -7.1614 0.8598 16 6 1.2975 -7.8714 -0.4209 17 6 0.4112 -7.1461 -1.4391 18 16 1.0772 -5.4732 -1.7032 19 1 -0.4850 0.8401 0.0004 20 1 0.3534 -2.3906 0.0024 21 1 2.9900 -6.0739 0.3645 22 1 2.1524 -5.5334 1.8384 23 1 0.3186 -7.0091 1.1667 24 1 2.3219 -7.9060 -0.7920 25 1 0.9288 -8.8875 -0.2803 26 1 0.4122 -7.6941 -2.3814 27 1 -0.6061 -7.0754 -1.0543 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575535445.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:04 Heat of formation + Delta-G solvation = -63.309871 kcal Electronic energy + Delta-G solvation = -12574.961826 eV Core-core repulsion = 10264.534209 eV Total energy + Delta-G solvation = -2310.427617 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.067 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.40687 -38.24728 -36.10290 -33.49066 -32.60347 -29.81634 -27.11360 -24.68518 -22.98571 -21.32331 -20.06226 -18.53736 -17.89123 -16.70735 -16.18275 -15.92989 -15.85855 -15.59716 -15.24119 -14.69826 -14.09417 -13.98365 -13.54598 -12.96116 -12.89767 -12.69239 -12.50867 -12.14633 -11.93842 -11.59602 -11.09004 -10.60484 -10.13326 -9.74165 -8.72678 -8.55323 -6.04546 0.31488 1.37002 1.39925 1.44500 1.53276 2.12139 2.24412 2.84622 3.15535 3.25267 3.61100 3.79779 3.92920 4.13780 4.27010 4.45307 4.47654 4.72007 4.92904 4.96041 5.33174 5.79379 5.88344 6.29743 6.44918 7.00186 7.39131 7.93555 8.61515 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.062235 B = 0.007455 C = 0.007196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.803207 B = 3755.112135 C = 3890.181364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.998 3.002 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.083 0.917 9 N -0.553 5.553 10 C 0.453 3.547 11 O -0.622 6.622 12 C -0.084 4.084 13 H 0.109 0.891 14 C 0.090 3.910 15 N -0.681 5.681 16 C 0.057 3.943 17 C -0.107 4.107 18 S -0.295 6.295 19 H 0.281 0.719 20 H 0.396 0.604 21 H 0.073 0.927 22 H 0.085 0.915 23 H 0.354 0.646 24 H 0.074 0.926 25 H 0.124 0.876 26 H 0.132 0.868 27 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 -12.365 -0.010 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.820 3.180 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.101 0.899 9 N -0.189 5.189 10 C 0.239 3.761 11 O -0.510 6.510 12 C -0.217 4.217 13 H 0.127 0.873 14 C -0.042 4.042 15 N -0.310 5.310 16 C -0.073 4.073 17 C -0.257 4.257 18 S -0.069 6.069 19 H 0.091 0.909 20 H 0.230 0.770 21 H 0.092 0.908 22 H 0.103 0.897 23 H 0.174 0.826 24 H 0.093 0.907 25 H 0.141 0.859 26 H 0.150 0.850 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.273 -12.064 -0.726 12.298 hybrid contribution -1.060 1.101 0.417 1.584 sum -3.334 -10.963 -0.309 11.463 Atomic orbital electron populations 1.69676 1.07017 1.29760 1.48906 1.26144 0.96566 1.02653 0.95531 0.84866 0.77861 0.76315 0.78936 1.19147 1.19696 1.19315 1.19759 0.92907 0.83717 1.50464 0.89927 1.41955 1.09321 1.04698 1.62887 1.19663 0.87688 0.84835 0.83901 1.90496 1.15252 1.87535 1.57672 1.23888 1.03516 0.97456 0.96889 0.87292 1.21865 0.96660 0.86407 0.99316 1.60154 1.20457 1.21044 1.29387 1.22355 1.00121 0.98605 0.86268 1.24481 1.02681 0.92078 1.06460 1.87632 1.86363 1.21205 1.11717 0.90912 0.77009 0.90800 0.89690 0.82637 0.90699 0.85857 0.85006 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.48 13.05 21.66 0.28 -49.20 15 2 C -0.01 -0.42 5.50 84.93 0.47 0.04 15 3 Si 1.00 42.83 29.55 68.60 2.03 44.85 15 4 H -0.27 -10.97 7.11 99.48 0.71 -10.27 15 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 15 7 C -0.34 -19.53 9.68 84.04 0.81 -18.72 15 8 H 0.08 5.05 7.16 -2.92 -0.02 5.03 15 9 N -0.55 -29.42 5.29 -306.98 -1.62 -31.04 15 10 C 0.45 22.55 6.81 87.66 0.60 23.15 15 11 O -0.62 -35.60 15.89 -3.05 -0.05 -35.65 15 12 C -0.08 -3.08 3.02 29.94 0.09 -2.99 15 13 H 0.11 3.57 8.11 -2.39 -0.02 3.55 15 14 C 0.09 2.87 5.34 86.47 0.46 3.34 15 15 N -0.68 -15.70 6.70 -515.04 -3.45 -19.16 15 16 C 0.06 1.10 6.42 86.47 0.56 1.65 15 17 C -0.11 -2.19 6.59 72.06 0.47 -1.71 15 18 S -0.29 -10.13 21.77 -56.49 -1.23 -11.36 15 19 H 0.28 14.14 8.31 -92.71 -0.77 13.37 15 20 H 0.40 20.22 7.88 -92.71 -0.73 19.49 15 21 H 0.07 2.71 7.69 -2.39 -0.02 2.69 15 22 H 0.08 2.77 8.14 -2.39 -0.02 2.75 15 23 H 0.35 6.86 8.65 -89.69 -0.78 6.08 15 24 H 0.07 1.66 7.92 -2.39 -0.02 1.65 15 25 H 0.12 1.55 8.14 -2.39 -0.02 1.53 15 26 H 0.13 2.15 8.14 -2.38 -0.02 2.13 15 27 H 0.10 1.75 8.14 -2.39 -0.02 1.73 15 Total: -1.00 -67.42 245.23 -0.89 -68.32 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: -0.31 Total: 28.48 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 3.46 Total: 4.76 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -4.79 Total: -99.39 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.05 Total: -35.65 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -10.13 SS G_CDS: -1.23 Total: -11.36 kcal Total: -67.42 -0.89 -68.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575535445.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.007 kcal (2) G-P(sol) polarization free energy of solvation -67.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds