Wall clock time and date at job start Mon Mar 30 2020 02:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86797 * 120.00260 * 2 1 4 4 H 1.48505 * 109.47376 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47038 * 299.99609 * 3 2 1 6 6 H 1.48502 * 109.47271 * 59.99897 * 3 2 1 7 7 C 1.38954 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00662 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99686 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00070 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00183 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00075 * 179.97438 * 10 9 7 13 13 H 1.09003 * 109.78550 * 29.50989 * 12 10 9 14 14 C 1.53249 * 109.62971 * 150.00155 * 12 10 9 15 15 N 1.46468 * 109.79284 * 181.66995 * 14 12 10 16 16 C 1.46463 * 112.56001 * 287.38393 * 15 14 12 17 17 C 1.53242 * 109.86417 * 72.65845 * 16 15 14 18 18 S 1.81733 * 109.53124 * 269.05340 * 12 10 9 19 19 H 0.96999 * 119.99831 * 0.02562 * 1 2 3 20 20 H 0.96998 * 120.00161 * 0.02562 * 9 7 2 21 21 H 1.09002 * 109.40649 * 61.59094 * 14 12 10 22 22 H 1.08997 * 109.40556 * 301.75214 * 14 12 10 23 23 H 1.00906 * 110.99654 * 162.27662 * 15 14 12 24 24 H 1.09003 * 109.40750 * 192.77920 * 16 15 14 25 25 H 1.09006 * 109.40523 * 312.61289 * 16 15 14 26 26 H 1.09005 * 109.63266 * 57.69720 * 17 16 15 27 27 H 1.08997 * 109.63959 * 178.29302 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5580 0.0010 12 6 1.2437 -4.8630 0.0011 13 1 0.2860 -4.7363 -0.5038 14 6 2.0685 -5.9341 -0.7206 15 7 1.3223 -7.1939 -0.7570 16 6 1.2627 -7.8496 0.5512 17 6 0.3101 -7.0831 1.4750 18 16 0.9650 -5.4029 1.7139 19 1 -0.4850 0.8400 -0.0004 20 1 0.3534 -2.3906 -0.0002 21 1 3.0089 -6.0853 -0.1905 22 1 2.2757 -5.6062 -1.7393 23 1 1.6978 -7.8164 -1.4568 24 1 0.9037 -8.8714 0.4282 25 1 2.2588 -7.8666 0.9936 26 1 -0.6784 -7.0292 1.0185 27 1 0.2451 -7.5910 2.4372 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575535446.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:05 Heat of formation + Delta-G solvation = -37.939863 kcal Electronic energy + Delta-G solvation = -12557.402495 eV Core-core repulsion = 10248.075004 eV Total energy + Delta-G solvation = -2309.327491 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.067 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.45431 -36.79056 -34.02964 -31.54363 -31.04232 -28.93385 -25.26045 -23.29410 -21.21410 -19.42655 -18.03039 -16.95981 -16.08094 -15.66090 -14.70258 -14.51675 -14.19961 -13.96851 -13.36818 -12.84178 -12.60019 -12.36937 -12.16914 -11.58287 -11.46854 -11.13061 -10.68612 -10.36983 -10.27753 -9.60038 -9.40379 -8.66229 -8.39854 -8.03970 -7.31139 -6.48586 -3.87351 1.87780 2.79511 3.16588 3.24917 3.32220 3.95975 4.08908 4.19195 4.86831 4.94939 5.13372 5.25279 5.30825 5.31611 5.50345 5.62828 5.84645 5.95373 6.15996 6.26297 6.96374 7.28113 7.49184 7.97704 8.52318 9.09613 9.45075 9.96553 10.68312 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.061839 B = 0.007501 C = 0.007174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.677127 B = 3731.980898 C = 3902.317595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.299 4.299 8 H 0.106 0.894 9 N -0.542 5.542 10 C 0.452 3.548 11 O -0.587 6.587 12 C -0.054 4.054 13 H 0.100 0.900 14 C 0.079 3.921 15 N -0.704 5.704 16 C 0.059 3.941 17 C -0.088 4.088 18 S -0.239 6.239 19 H 0.274 0.726 20 H 0.395 0.605 21 H 0.058 0.942 22 H 0.085 0.915 23 H 0.350 0.650 24 H 0.079 0.921 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 -11.973 -0.241 12.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.429 4.429 8 H 0.124 0.876 9 N -0.177 5.177 10 C 0.236 3.764 11 O -0.473 6.473 12 C -0.186 4.186 13 H 0.118 0.882 14 C -0.051 4.051 15 N -0.336 5.336 16 C -0.072 4.072 17 C -0.238 4.238 18 S -0.013 6.013 19 H 0.084 0.916 20 H 0.229 0.771 21 H 0.076 0.924 22 H 0.103 0.897 23 H 0.169 0.831 24 H 0.098 0.902 25 H 0.064 0.936 26 H 0.107 0.893 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.015 -10.949 0.822 11.027 hybrid contribution 0.262 -0.123 -1.015 1.056 sum -0.754 -11.072 -0.194 11.100 Atomic orbital electron populations 1.69631 1.06051 1.28416 1.49073 1.25337 0.95662 0.99944 0.96827 0.85755 0.79747 0.80766 0.77822 1.19069 1.20597 1.20569 1.19834 0.93550 0.82023 1.47522 0.87578 1.41892 1.09448 1.04438 1.61908 1.18862 0.87781 0.83634 0.86127 1.90522 1.13320 1.86635 1.56813 1.23200 1.02846 0.97713 0.94879 0.88222 1.21817 0.94357 0.87735 1.01238 1.59480 1.59479 1.07042 1.07647 1.22029 0.98476 0.97080 0.89651 1.23534 1.01889 0.95713 1.02620 1.87305 1.84604 1.17062 1.12299 0.91629 0.77096 0.92376 0.89651 0.83133 0.90222 0.93618 0.89342 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.35 13.05 55.50 0.72 -23.63 15 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 15 3 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 15 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 15 8 H 0.11 3.12 7.16 -52.49 -0.38 2.74 15 9 N -0.54 -14.23 5.29 -10.96 -0.06 -14.28 15 10 C 0.45 11.16 6.86 -10.98 -0.08 11.09 15 11 O -0.59 -16.34 15.80 5.55 0.09 -16.25 15 12 C -0.05 -1.06 3.12 -27.75 -0.09 -1.14 15 13 H 0.10 1.87 8.14 -51.93 -0.42 1.45 15 14 C 0.08 1.33 5.26 -3.93 -0.02 1.31 15 15 N -0.70 -9.21 6.58 -114.15 -0.75 -9.96 15 16 C 0.06 0.69 6.39 -3.94 -0.03 0.67 15 17 C -0.09 -1.16 6.69 37.28 0.25 -0.91 15 18 S -0.24 -4.41 21.74 -107.50 -2.34 -6.75 15 19 H 0.27 7.01 8.31 -40.82 -0.34 6.67 15 20 H 0.40 10.08 7.90 -40.82 -0.32 9.75 15 21 H 0.06 1.06 7.69 -51.93 -0.40 0.66 15 22 H 0.09 1.40 8.14 -51.93 -0.42 0.98 15 23 H 0.35 3.64 8.89 -39.29 -0.35 3.29 15 24 H 0.08 0.72 8.14 -51.93 -0.42 0.29 15 25 H 0.05 0.58 7.91 -51.93 -0.41 0.16 15 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 27 H 0.10 1.13 8.14 -51.93 -0.42 0.71 15 LS Contribution 245.39 15.07 3.70 3.70 Total: -1.00 -30.96 245.39 -6.96 -37.92 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -3.11 Total: 10.27 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.20 Total: 3.03 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.08 Total: -47.87 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.09 Total: -16.25 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -4.41 SS G_CDS: -2.34 Total: -6.75 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.96 -6.96 -37.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575535446.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.019 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds