Wall clock time and date at job start Mon Mar 30 2020 02:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.81940 * 2 1 4 4 C 1.54377 * 109.83334 * 239.01365 * 2 1 3 5 5 C 1.55300 * 102.25502 * 261.84318 * 4 2 1 6 6 H 1.09007 * 111.12449 * 83.79023 * 5 4 2 7 7 S 1.81404 * 111.12583 * 207.94641 * 5 4 2 8 8 C 1.81390 * 103.00028 * 185.00092 * 7 5 4 9 9 C 1.50704 * 109.47366 * 180.02562 * 8 7 5 10 10 H 1.07996 * 119.99695 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00193 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00019 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99891 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47437 * 59.99725 * 13 11 9 15 15 H 1.48503 * 109.47120 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46951 * 299.99736 * 13 11 9 17 17 C 1.54940 * 100.94415 * 325.86750 * 5 4 2 18 18 O 1.43245 * 109.82831 * 120.88377 * 2 1 3 19 19 H 1.08991 * 109.47807 * 300.57033 * 1 2 3 20 20 H 1.09006 * 109.47047 * 60.57674 * 1 2 3 21 21 H 1.09001 * 109.46845 * 180.56739 * 1 2 3 22 22 H 1.09009 * 109.46666 * 179.42929 * 3 2 1 23 23 H 1.08994 * 109.47110 * 299.42743 * 3 2 1 24 24 H 1.09000 * 109.47794 * 59.43019 * 3 2 1 25 25 H 1.09006 * 110.84785 * 20.04049 * 4 2 1 26 26 H 1.09004 * 110.84470 * 143.44770 * 4 2 1 27 27 H 1.09001 * 109.47751 * 300.00470 * 8 7 5 28 28 H 1.09003 * 109.47203 * 60.00174 * 8 7 5 29 29 H 0.97003 * 119.99979 * 180.02562 * 12 11 9 30 30 H 1.08997 * 110.31031 * 277.52940 * 17 5 4 31 31 H 1.08999 * 110.30948 * 155.35829 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4393 0.0000 4 6 2.0538 -0.7476 -1.2450 5 6 2.3682 -2.1575 -0.6747 6 1 1.4731 -2.7791 -0.6482 7 16 3.6922 -2.9636 -1.6171 8 6 3.7708 -4.6179 -0.8772 9 6 4.8431 -5.4246 -1.5631 10 1 5.4193 -4.9861 -2.3644 11 6 5.0877 -6.7229 -1.1685 12 7 4.3857 -7.2570 -0.1932 13 14 6.4164 -7.7230 -2.0193 14 1 7.7275 -7.0451 -1.8556 15 1 6.4808 -9.0773 -1.4135 16 1 6.0975 -7.8414 -3.4648 17 6 2.8407 -1.7975 0.7562 18 8 2.0159 -0.6917 1.1565 19 1 -0.3634 0.5226 0.8847 20 1 -0.3633 0.5049 -0.8952 21 1 -0.3633 -1.0276 0.0102 22 1 3.1388 1.4327 0.0102 23 1 1.6970 1.9523 -0.8950 24 1 1.6803 1.9585 0.8848 25 1 1.2852 -0.8034 -2.0159 26 1 2.9552 -0.2724 -1.6321 27 1 4.0049 -4.5307 0.1838 28 1 2.8085 -5.1156 -0.9971 29 1 4.5580 -8.1703 0.0846 30 1 3.8899 -1.5023 0.7451 31 1 2.6919 -2.6430 1.4278 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594903788.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:15 Heat of formation + Delta-G solvation = -84.890103 kcal Electronic energy + Delta-G solvation = -12602.587934 eV Core-core repulsion = 10394.764871 eV Total energy + Delta-G solvation = -2207.823063 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.77952 -35.31732 -34.18431 -32.95939 -30.70257 -28.23429 -26.92479 -25.23679 -23.08510 -21.06421 -18.69342 -17.84836 -17.22936 -16.71033 -16.20349 -15.49651 -14.86560 -14.68190 -14.46066 -14.42282 -14.19484 -13.76176 -13.18989 -12.98703 -12.74295 -12.65227 -12.56308 -12.40646 -12.17546 -11.84309 -11.79423 -11.30063 -10.76117 -10.72981 -10.58822 -8.56394 -8.34918 -6.48933 0.86176 1.39934 1.42918 1.51718 1.90011 2.35805 2.79102 2.99821 3.36232 3.68137 3.85097 4.00299 4.05994 4.19985 4.57418 4.62894 4.74607 4.77670 4.88142 4.89928 4.90639 4.92341 4.95712 5.00793 5.26848 5.39082 5.54564 5.85561 6.03705 6.58433 7.19613 8.76923 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.072436 B = 0.006134 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.457909 B = 4563.400018 C = 4693.158780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.094 3.906 3 C -0.150 4.150 4 C -0.111 4.111 5 C -0.093 4.093 6 H 0.090 0.910 7 S -0.279 6.279 8 C 0.090 3.910 9 C -0.540 4.540 10 H 0.063 0.937 11 C 0.015 3.985 12 N -0.925 5.925 13 Si 0.977 3.023 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.266 1.266 17 C 0.067 3.933 18 O -0.388 6.388 19 H 0.067 0.933 20 H 0.091 0.909 21 H 0.049 0.951 22 H 0.053 0.947 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.016 0.984 28 H 0.012 0.988 29 H 0.271 0.729 30 H 0.067 0.933 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.958 13.808 -0.807 15.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.054 3.946 3 C -0.207 4.207 4 C -0.150 4.150 5 C -0.223 4.223 6 H 0.108 0.892 7 S -0.050 6.050 8 C -0.057 4.057 9 C -0.578 4.578 10 H 0.082 0.918 11 C -0.186 4.186 12 N -0.564 5.564 13 Si 0.800 3.200 14 H -0.191 1.191 15 H -0.201 1.201 16 H -0.190 1.190 17 C -0.012 4.012 18 O -0.308 6.308 19 H 0.086 0.914 20 H 0.110 0.890 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.108 0.892 24 H 0.086 0.914 25 H 0.123 0.877 26 H 0.104 0.896 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.430 14.124 -1.337 15.190 hybrid contribution -0.082 -1.592 0.731 1.754 sum -5.512 12.532 -0.605 13.704 Atomic orbital electron populations 1.22092 0.92505 1.02446 1.03670 1.22376 0.95356 0.93150 0.83732 1.22089 1.01303 0.93665 1.03624 1.23067 1.03021 0.90497 0.98388 1.24780 0.99124 1.00446 0.97915 0.89201 1.86346 1.48362 1.16967 1.53344 1.20764 0.99111 0.88939 0.96921 1.20969 1.19120 0.98103 1.19631 0.91835 1.25926 0.98834 0.98305 0.95518 1.70052 1.41656 1.15700 1.28982 0.85316 0.78647 0.77257 0.78762 1.19057 1.20123 1.19031 1.23633 0.94960 0.89117 0.93497 1.88391 1.67413 1.43579 1.31421 0.91445 0.89044 0.93134 0.92808 0.89175 0.91423 0.87680 0.89559 0.96586 0.96944 0.92031 0.91465 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.73 71.98 0.63 -2.34 16 2 C 0.09 2.26 1.27 -10.33 -0.01 2.25 16 3 C -0.15 -2.90 8.75 71.98 0.63 -2.27 16 4 C -0.11 -2.91 5.58 31.85 0.18 -2.73 16 5 C -0.09 -3.19 3.60 32.05 0.12 -3.08 16 6 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 7 S -0.28 -12.05 21.10 -56.49 -1.19 -13.24 16 8 C 0.09 4.82 5.70 71.24 0.41 5.22 16 9 C -0.54 -30.91 9.13 25.60 0.23 -30.68 16 10 H 0.06 3.60 7.71 -2.91 -0.02 3.57 16 11 C 0.02 0.85 5.46 84.66 0.46 1.31 16 12 N -0.93 -54.66 13.29 21.45 0.28 -54.38 16 13 Si 0.98 43.58 29.54 68.60 2.03 45.60 16 14 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 16 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 17 C 0.07 2.27 7.27 72.65 0.53 2.80 16 18 O -0.39 -12.09 10.68 -148.98 -1.59 -13.68 16 19 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 20 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 21 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 23 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.10 2.33 7.82 -2.38 -0.02 2.31 16 26 H 0.09 2.25 7.74 -2.39 -0.02 2.24 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 30 H 0.07 2.35 8.02 -2.39 -0.02 2.33 16 31 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -62.37 272.42 3.77 -58.60 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.08 Total: 6.59 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 3.17 Total: -29.49 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.28 Total: -54.38 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.59 Total: -13.68 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -12.05 SS G_CDS: -1.19 Total: -13.24 kcal Total: -62.37 3.77 -58.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903788.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.293 kcal (2) G-P(sol) polarization free energy of solvation -62.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds