Wall clock time and date at job start Mon Mar 30 2020 02:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.99155 * 2 1 4 4 C 1.54156 * 109.90464 * 238.93017 * 2 1 3 5 5 C 1.54812 * 104.16397 * 242.63670 * 4 2 1 6 6 H 1.08996 * 110.90421 * 262.63039 * 5 4 2 7 7 S 1.81396 * 110.90989 * 139.05401 * 5 4 2 8 8 C 1.81404 * 103.00020 * 177.92713 * 7 5 4 9 9 C 1.50696 * 109.46906 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.54997 * 102.12234 * 20.83823 * 5 4 2 18 18 O 1.43754 * 109.87878 * 121.08036 * 2 1 3 19 19 H 1.08999 * 109.47073 * 300.37263 * 1 2 3 20 20 H 1.08996 * 109.47037 * 60.37404 * 1 2 3 21 21 H 1.08996 * 109.46752 * 180.37258 * 1 2 3 22 22 H 1.08999 * 109.47278 * 179.63001 * 3 2 1 23 23 H 1.09002 * 109.47061 * 299.62662 * 3 2 1 24 24 H 1.09000 * 109.47233 * 59.62535 * 3 2 1 25 25 H 1.09001 * 110.52470 * 123.95874 * 4 2 1 26 26 H 1.09004 * 110.48408 * 1.29477 * 4 2 1 27 27 H 1.09005 * 109.46928 * 60.00053 * 8 7 5 28 28 H 1.09002 * 109.47043 * 300.00337 * 8 7 5 29 29 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 30 30 H 1.09005 * 110.61671 * 81.49609 * 17 5 4 31 31 H 1.08995 * 110.62306 * 204.49582 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 6 2.0548 -0.7480 -1.2415 5 6 2.8325 -1.9525 -0.6574 6 1 3.9004 -1.7397 -0.6096 7 16 2.5176 -3.4559 -1.6223 8 6 3.5635 -4.6921 -0.8047 9 6 3.4103 -6.0196 -1.5014 10 1 2.7502 -6.1104 -2.3514 11 6 4.1130 -7.1182 -1.0538 12 7 3.9798 -8.2766 -1.6621 13 14 5.2543 -6.9612 0.4166 14 1 6.6149 -6.5918 -0.0499 15 1 4.7418 -5.9092 1.3309 16 1 5.3134 -8.2580 1.1379 17 6 2.2281 -2.0714 0.7649 18 8 2.0188 -0.6979 1.1578 19 1 -0.3633 0.5196 0.8866 20 1 -0.3633 0.5080 -0.8933 21 1 -0.3633 -1.0276 0.0067 22 1 3.1430 1.4279 0.0066 23 1 1.6999 1.9529 -0.8933 24 1 1.6890 1.9569 0.8866 25 1 2.7211 -0.1081 -1.8200 26 1 1.2248 -1.0927 -1.8583 27 1 3.2606 -4.7922 0.2376 28 1 4.6053 -4.3748 -0.8515 29 1 4.4744 -9.0494 -1.3474 30 1 1.2814 -2.6108 0.7358 31 1 2.9295 -2.5611 1.4403 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594903789.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:17 Heat of formation + Delta-G solvation = -63.052529 kcal Electronic energy + Delta-G solvation = -12681.552869 eV Core-core repulsion = 10474.676754 eV Total energy + Delta-G solvation = -2206.876115 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.67115 -33.15405 -33.02651 -31.73571 -29.39733 -27.47353 -25.83523 -22.73709 -21.59166 -20.06787 -17.00291 -16.47339 -15.94676 -15.23040 -14.68119 -14.17204 -13.86217 -13.38104 -13.15750 -12.86646 -12.59268 -12.37159 -12.17478 -11.87627 -11.69132 -11.38204 -11.01633 -10.83101 -10.72073 -10.37328 -9.94348 -9.67309 -9.60602 -9.00955 -8.74773 -6.91419 -6.21380 -4.23891 2.35950 3.18806 3.26363 3.27232 3.55655 3.95797 4.27920 4.58106 4.75040 4.86148 5.08731 5.09351 5.11689 5.36631 5.51645 5.60744 5.63406 5.78229 5.80844 5.84646 6.00102 6.05917 6.13471 6.24461 6.53490 6.64315 6.99747 7.38689 8.26488 8.80934 9.34240 10.90666 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.056776 B = 0.007029 C = 0.006637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.051187 B = 3982.483790 C = 4217.509321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 C -0.142 4.142 4 C -0.120 4.120 5 C -0.106 4.106 6 H 0.091 0.909 7 S -0.247 6.247 8 C 0.045 3.955 9 C -0.516 4.516 10 H 0.084 0.916 11 C 0.080 3.920 12 N -0.890 5.890 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.266 1.266 16 H -0.282 1.282 17 C 0.056 3.944 18 O -0.371 6.371 19 H 0.060 0.940 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.035 0.965 28 H 0.030 0.970 29 H 0.268 0.732 30 H 0.075 0.925 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.501 16.248 4.002 17.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.057 3.943 3 C -0.199 4.199 4 C -0.158 4.158 5 C -0.235 4.235 6 H 0.110 0.890 7 S -0.019 6.019 8 C -0.103 4.103 9 C -0.555 4.555 10 H 0.102 0.898 11 C -0.124 4.124 12 N -0.528 5.528 13 Si 0.704 3.296 14 H -0.199 1.199 15 H -0.191 1.191 16 H -0.207 1.207 17 C -0.023 4.023 18 O -0.290 6.290 19 H 0.079 0.921 20 H 0.084 0.916 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.068 16.014 3.313 16.851 hybrid contribution 1.501 -0.144 1.564 2.172 sum -2.567 15.870 4.877 16.800 Atomic orbital electron populations 1.22245 0.94789 1.02829 1.02131 1.22119 0.93747 0.92995 0.85398 1.21892 1.01691 0.94109 1.02197 1.22860 1.00409 0.94978 0.97550 1.24676 1.02869 0.97786 0.98173 0.89047 1.86745 1.64107 1.03964 1.47089 1.21445 0.95138 0.95894 0.97813 1.20472 1.28395 0.90118 1.16470 0.89830 1.24858 0.96166 0.94793 0.96614 1.69866 1.41826 1.00447 1.40642 0.86816 0.81589 0.78039 0.83163 1.19874 1.19059 1.20723 1.24003 1.00566 0.83746 0.93963 1.88864 1.86006 1.21038 1.33129 0.92074 0.91650 0.91861 0.91955 0.91355 0.92032 0.89991 0.89566 0.94666 0.95165 0.92182 0.90725 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.62 37.16 0.32 -1.49 16 2 C 0.10 1.23 1.19 -90.02 -0.11 1.12 16 3 C -0.14 -1.45 8.67 37.16 0.32 -1.13 16 4 C -0.12 -1.61 5.88 -25.17 -0.15 -1.75 16 5 C -0.11 -1.73 3.63 -24.72 -0.09 -1.82 16 6 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 7 S -0.25 -5.12 20.97 -107.50 -2.25 -7.38 16 8 C 0.04 1.07 4.72 36.00 0.17 1.24 16 9 C -0.52 -14.67 9.68 -34.44 -0.33 -15.00 16 10 H 0.08 2.61 7.96 -52.49 -0.42 2.19 16 11 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 12 N -0.89 -26.85 13.96 55.43 0.77 -26.07 16 13 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.06 0.88 7.09 38.21 0.27 1.15 16 18 O -0.37 -5.64 10.86 -35.23 -0.38 -6.03 16 19 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 20 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.98 7.70 -51.93 -0.40 0.58 16 26 H 0.09 1.17 7.37 -51.93 -0.38 0.79 16 27 H 0.04 0.83 7.20 -51.92 -0.37 0.45 16 28 H 0.03 0.71 7.57 -51.92 -0.39 0.32 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.07 1.20 8.03 -51.93 -0.42 0.78 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 268.22 15.07 4.04 4.04 Total: -1.00 -29.80 268.22 -7.12 -36.91 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -4.93 Total: -2.28 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 0.31 Total: -15.48 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.77 Total: -26.07 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.38 Total: -6.03 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Atomic # 16 Polarization: -5.12 SS G_CDS: -2.25 Total: -7.38 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.80 -7.12 -36.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903789.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.139 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds