Wall clock time and date at job start Mon Mar 30 2020 02:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.99155 * 2 1 4 4 C 1.54156 * 109.90464 * 238.93017 * 2 1 3 5 5 C 1.54812 * 104.16397 * 242.63670 * 4 2 1 6 6 H 1.08996 * 110.90421 * 262.63039 * 5 4 2 7 7 S 1.81396 * 110.90989 * 139.05401 * 5 4 2 8 8 C 1.81404 * 103.00020 * 177.92713 * 7 5 4 9 9 C 1.50696 * 109.46906 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.54997 * 102.12234 * 20.83823 * 5 4 2 18 18 O 1.43754 * 109.87878 * 121.08036 * 2 1 3 19 19 H 1.08999 * 109.47073 * 300.37263 * 1 2 3 20 20 H 1.08996 * 109.47037 * 60.37404 * 1 2 3 21 21 H 1.08996 * 109.46752 * 180.37258 * 1 2 3 22 22 H 1.08999 * 109.47278 * 179.63001 * 3 2 1 23 23 H 1.09002 * 109.47061 * 299.62662 * 3 2 1 24 24 H 1.09000 * 109.47233 * 59.62535 * 3 2 1 25 25 H 1.09001 * 110.52470 * 123.95874 * 4 2 1 26 26 H 1.09004 * 110.48408 * 1.29477 * 4 2 1 27 27 H 1.09005 * 109.46928 * 60.00053 * 8 7 5 28 28 H 1.09002 * 109.47043 * 300.00337 * 8 7 5 29 29 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 30 30 H 1.09005 * 110.61671 * 81.49609 * 17 5 4 31 31 H 1.08995 * 110.62306 * 204.49582 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 6 2.0548 -0.7480 -1.2415 5 6 2.8325 -1.9525 -0.6574 6 1 3.9004 -1.7397 -0.6096 7 16 2.5176 -3.4559 -1.6223 8 6 3.5635 -4.6921 -0.8047 9 6 3.4103 -6.0196 -1.5014 10 1 2.7502 -6.1104 -2.3514 11 6 4.1130 -7.1182 -1.0538 12 7 3.9798 -8.2766 -1.6621 13 14 5.2543 -6.9612 0.4166 14 1 6.6149 -6.5918 -0.0499 15 1 4.7418 -5.9092 1.3309 16 1 5.3134 -8.2580 1.1379 17 6 2.2281 -2.0714 0.7649 18 8 2.0188 -0.6979 1.1578 19 1 -0.3633 0.5196 0.8866 20 1 -0.3633 0.5080 -0.8933 21 1 -0.3633 -1.0276 0.0067 22 1 3.1430 1.4279 0.0066 23 1 1.6999 1.9529 -0.8933 24 1 1.6890 1.9569 0.8866 25 1 2.7211 -0.1081 -1.8200 26 1 1.2248 -1.0927 -1.8583 27 1 3.2606 -4.7922 0.2376 28 1 4.6053 -4.3748 -0.8515 29 1 4.4744 -9.0494 -1.3474 30 1 1.2814 -2.6108 0.7358 31 1 2.9295 -2.5611 1.4403 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594903789.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:17 Heat of formation + Delta-G solvation = -81.464897 kcal Electronic energy + Delta-G solvation = -12682.351289 eV Core-core repulsion = 10474.676754 eV Total energy + Delta-G solvation = -2207.674535 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.77631 -35.23361 -34.10786 -32.93474 -31.46401 -28.30982 -26.94189 -24.72459 -22.94429 -21.07862 -19.11989 -17.79839 -17.23099 -16.59184 -16.18706 -15.72510 -15.23368 -14.76989 -14.48600 -14.36415 -14.13803 -13.78578 -13.20081 -12.96554 -12.72951 -12.68041 -12.48615 -12.26644 -12.15411 -11.86727 -11.73222 -11.41609 -10.91370 -10.72037 -10.68810 -8.59275 -8.39765 -6.49635 0.81886 1.32261 1.33787 1.44270 1.85801 2.26954 2.86621 2.93282 3.44199 3.64679 3.87545 3.99529 4.08762 4.23155 4.56531 4.58491 4.61244 4.70309 4.72961 4.79445 4.87862 4.90698 4.98157 5.00924 5.26058 5.30701 5.38290 5.92034 6.04325 6.54444 7.13090 8.76113 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.056776 B = 0.007029 C = 0.006637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.051187 B = 3982.483790 C = 4217.509321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 C -0.139 4.139 4 C -0.116 4.116 5 C -0.095 4.095 6 H 0.097 0.903 7 S -0.273 6.273 8 C 0.047 3.953 9 C -0.531 4.531 10 H 0.037 0.963 11 C 0.021 3.979 12 N -0.939 5.939 13 Si 0.951 3.049 14 H -0.262 1.262 15 H -0.246 1.246 16 H -0.276 1.276 17 C 0.058 3.942 18 O -0.380 6.380 19 H 0.067 0.933 20 H 0.085 0.915 21 H 0.047 0.953 22 H 0.060 0.940 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.042 0.958 28 H 0.039 0.961 29 H 0.273 0.727 30 H 0.067 0.933 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 18.565 5.346 19.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 C -0.196 4.196 4 C -0.154 4.154 5 C -0.224 4.224 6 H 0.116 0.884 7 S -0.044 6.044 8 C -0.101 4.101 9 C -0.570 4.570 10 H 0.055 0.945 11 C -0.179 4.179 12 N -0.578 5.578 13 Si 0.773 3.227 14 H -0.186 1.186 15 H -0.169 1.169 16 H -0.201 1.201 17 C -0.021 4.021 18 O -0.300 6.300 19 H 0.087 0.913 20 H 0.104 0.896 21 H 0.066 0.934 22 H 0.079 0.921 23 H 0.109 0.891 24 H 0.085 0.915 25 H 0.120 0.880 26 H 0.101 0.899 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.469 18.345 4.649 19.240 hybrid contribution 1.216 -0.800 1.061 1.801 sum -2.253 17.545 5.710 18.588 Atomic orbital electron populations 1.22252 0.93804 1.02295 1.03544 1.22380 0.94627 0.93906 0.83896 1.21910 1.01611 0.92425 1.03637 1.22924 1.00361 0.93953 0.98179 1.24753 1.03783 0.95864 0.98007 0.88416 1.86750 1.63559 1.05907 1.48232 1.21230 0.96300 0.94825 0.97772 1.20673 1.27739 0.92867 1.15684 0.94494 1.25880 0.97922 0.94090 1.00027 1.70017 1.43332 1.01579 1.42823 0.85658 0.79239 0.78784 0.79057 1.18649 1.16901 1.20121 1.23885 1.00222 0.84430 0.93532 1.88867 1.86276 1.20494 1.34386 0.91349 0.89622 0.93371 0.92087 0.89094 0.91495 0.88001 0.89857 0.93935 0.94313 0.91792 0.91441 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 8.62 71.98 0.62 -2.58 16 2 C 0.09 2.05 1.19 -10.40 -0.01 2.04 16 3 C -0.14 -2.34 8.67 71.98 0.62 -1.72 16 4 C -0.12 -2.82 5.88 31.60 0.19 -2.63 16 5 C -0.09 -2.92 3.63 31.90 0.12 -2.80 16 6 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 7 S -0.27 -11.22 20.97 -56.49 -1.18 -12.41 16 8 C 0.05 2.22 4.72 71.23 0.34 2.55 16 9 C -0.53 -30.98 9.68 25.60 0.25 -30.73 16 10 H 0.04 2.43 7.96 -2.91 -0.02 2.41 16 11 C 0.02 1.21 5.47 84.66 0.46 1.67 16 12 N -0.94 -58.04 13.96 21.45 0.30 -57.74 16 13 Si 0.95 42.69 27.47 68.60 1.88 44.57 16 14 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 15 H -0.25 -10.13 6.54 99.48 0.65 -9.48 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 17 C 0.06 1.74 7.09 72.67 0.51 2.26 16 18 O -0.38 -10.70 10.86 -148.98 -1.62 -12.32 16 19 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 20 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.10 2.09 7.70 -2.39 -0.02 2.07 16 26 H 0.08 2.10 7.37 -2.39 -0.02 2.08 16 27 H 0.04 1.94 7.20 -2.39 -0.02 1.92 16 28 H 0.04 1.76 7.57 -2.39 -0.02 1.74 16 29 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 30 H 0.07 2.11 8.03 -2.38 -0.02 2.09 16 31 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -65.16 268.22 3.50 -61.66 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.03 Total: 8.18 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 3.10 Total: -31.94 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.30 Total: -57.74 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -1.62 Total: -12.32 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.88 Total: 44.57 kcal Atomic # 16 Polarization: -11.22 SS G_CDS: -1.18 Total: -12.41 kcal Total: -65.16 3.50 -61.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903789.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.807 kcal (2) G-P(sol) polarization free energy of solvation -65.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds