Wall clock time and date at job start Mon Mar 30 2020 02:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 119.99933 * 2 1 4 4 H 1.48494 * 109.47037 * 269.99347 * 3 2 1 5 5 H 1.48497 * 109.47199 * 30.00063 * 3 2 1 6 6 H 1.48504 * 109.46944 * 149.99851 * 3 2 1 7 7 C 1.38796 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00408 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00316 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47182 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00076 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99713 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99970 * 179.97438 * 13 11 10 15 15 H 1.09008 * 115.56043 * 9.29258 * 14 13 11 16 16 C 1.53000 * 117.50040 * 223.60695 * 14 13 11 17 17 C 1.53002 * 60.02940 * 252.49639 * 16 14 13 18 18 H 1.09000 * 117.49996 * 107.50493 * 17 16 14 19 19 N 1.46909 * 117.49722 * 252.51823 * 17 16 14 20 20 H 0.97003 * 119.99685 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46642 * 59.99465 * 10 9 7 22 22 H 1.08999 * 109.46927 * 299.99837 * 10 9 7 23 23 H 0.96995 * 120.00501 * 359.97438 * 13 11 10 24 24 H 1.09002 * 117.49833 * 359.97438 * 16 14 13 25 25 H 1.09002 * 117.49953 * 144.99785 * 16 14 13 26 26 H 1.00897 * 110.99976 * 248.61400 * 19 17 16 27 27 H 1.00897 * 110.99470 * 12.56579 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3027 -0.0001 12 8 0.7910 -5.5022 0.0000 13 7 2.8440 -6.3431 0.0003 14 6 2.3303 -7.7151 0.0003 15 1 1.2565 -7.8152 -0.1589 16 6 3.0025 -8.7212 0.9366 17 6 3.2347 -8.8088 -0.5731 18 1 4.2120 -8.5077 -0.9503 19 7 2.5891 -9.9130 -1.2957 20 1 -0.4850 0.8401 0.0004 21 1 3.1244 -3.7313 0.8905 22 1 3.1243 -3.7314 -0.8895 23 1 3.8008 -6.1835 0.0006 24 1 3.8272 -8.3624 1.5524 25 1 2.3710 -9.4830 1.3937 26 1 3.2731 -10.5752 -1.6301 27 1 1.8978 -10.3677 -0.7183 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701012422.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:06 Heat of formation + Delta-G solvation = -14.929324 kcal Electronic energy + Delta-G solvation = -11808.158750 eV Core-core repulsion = 9499.829071 eV Total energy + Delta-G solvation = -2308.329679 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.067 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.45819 -37.52674 -33.42739 -32.42226 -30.77994 -28.74008 -25.48471 -22.32508 -21.45062 -20.45208 -17.84463 -17.11516 -16.39822 -15.12294 -14.99074 -14.85401 -14.79596 -13.95733 -13.27287 -12.84617 -12.79435 -12.46684 -12.19967 -11.57334 -11.13592 -11.05056 -11.01920 -10.76131 -9.81953 -9.45675 -9.06325 -8.94716 -8.48413 -8.23196 -6.49448 -6.21011 -3.91670 2.93784 2.99134 3.23006 3.27263 3.31283 3.62505 3.78885 4.20845 4.26765 4.69717 4.72548 4.84163 5.09903 5.14123 5.48768 5.59690 5.64745 5.88370 5.97720 6.13409 6.61237 6.78354 7.08924 7.60103 7.68215 8.35804 8.59541 9.24190 10.86429 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.088426 B = 0.005288 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.571572 B = 5293.293115 C = 5453.199010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.536 3.464 12 O -0.514 6.514 13 N -0.709 5.709 14 C 0.098 3.902 15 H 0.138 0.862 16 C -0.233 4.233 17 C 0.022 3.978 18 H 0.119 0.881 19 N -0.814 5.814 20 H 0.268 0.732 21 H 0.091 0.909 22 H 0.091 0.909 23 H 0.399 0.601 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.347 0.653 27 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.173 -15.443 0.473 17.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.323 3.677 12 O -0.387 6.387 13 N -0.361 5.361 14 C -0.010 4.010 15 H 0.155 0.845 16 C -0.275 4.275 17 C -0.092 4.092 18 H 0.137 0.863 19 N -0.342 5.342 20 H 0.078 0.922 21 H 0.109 0.891 22 H 0.109 0.891 23 H 0.233 0.767 24 H 0.116 0.884 25 H 0.118 0.882 26 H 0.160 0.840 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.731 -15.090 -0.063 16.524 hybrid contribution 2.900 0.716 0.820 3.098 sum 9.632 -14.374 0.757 17.319 Atomic orbital electron populations 1.70023 1.05953 1.27460 1.46838 1.25000 0.95042 0.99050 0.94543 0.86155 0.79381 0.81532 0.78342 1.20269 1.20747 1.19714 1.22868 0.94919 0.91642 1.58969 0.90906 1.85420 1.04815 0.96281 1.96718 1.23532 1.06684 0.95133 1.05031 1.20338 0.86521 0.86147 0.74739 1.90697 1.15365 1.85466 1.47187 1.45380 1.09692 1.04128 1.76898 1.21766 0.98741 0.79055 1.01447 0.84467 1.24286 1.04661 1.03891 0.94617 1.22835 0.98734 0.96251 0.91396 0.86335 1.58315 1.18671 1.14447 1.42787 0.92173 0.89115 0.89075 0.76716 0.88388 0.88244 0.83964 0.84098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.32 13.22 55.49 0.73 -25.58 15 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 15 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 15 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.54 -15.35 9.50 30.94 0.29 -15.06 15 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 15 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 15 10 C -0.15 -3.12 6.16 36.00 0.22 -2.90 15 11 C 0.54 10.28 7.85 -10.99 -0.09 10.19 15 12 O -0.51 -11.98 15.43 5.56 0.09 -11.90 15 13 N -0.71 -9.89 5.57 -53.77 -0.30 -10.19 15 14 C 0.10 1.24 6.36 -67.89 -0.43 0.81 15 15 H 0.14 2.07 7.40 -51.92 -0.38 1.69 15 16 C -0.23 -2.16 10.15 -26.73 -0.27 -2.43 15 17 C 0.02 0.21 7.16 -67.67 -0.48 -0.28 15 18 H 0.12 0.97 8.14 -51.93 -0.42 0.55 15 19 N -0.81 -6.90 9.90 -4.63 -0.05 -6.95 15 20 H 0.27 7.56 8.31 -40.82 -0.34 7.22 15 21 H 0.09 1.69 8.14 -51.92 -0.42 1.27 15 22 H 0.09 1.71 8.14 -51.92 -0.42 1.28 15 23 H 0.40 4.26 8.83 -40.82 -0.36 3.90 15 24 H 0.10 0.84 8.14 -51.93 -0.42 0.42 15 25 H 0.10 0.83 8.09 -51.93 -0.42 0.41 15 26 H 0.35 2.14 9.08 -39.29 -0.36 1.78 15 27 H 0.35 2.53 8.78 -39.29 -0.34 2.18 15 LS Contribution 259.09 15.07 3.90 3.90 Total: -1.00 -34.46 259.09 -6.81 -41.27 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -3.10 Total: 4.47 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.85 Total: -7.66 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.39 Total: -42.72 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -34.46 -6.81 -41.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012422.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.343 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds