Wall clock time and date at job start Mon Mar 30 2020 02:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86795 * 119.99985 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27752 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27893 * 3 2 1 6 6 H 1.48493 * 109.47327 * 60.27760 * 3 2 1 7 7 C 1.38805 * 119.99846 * 180.28098 * 2 1 3 8 8 H 1.07999 * 119.99864 * 179.72445 * 7 2 1 9 9 S 1.76198 * 119.99843 * 359.71985 * 7 2 1 10 10 C 1.81005 * 99.99931 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47415 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99879 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00401 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00383 * 180.02562 * 13 11 10 15 15 H 1.08998 * 115.54844 * 350.71170 * 14 13 11 16 16 C 1.52994 * 117.50174 * 136.39329 * 14 13 11 17 17 C 1.52993 * 60.00443 * 107.48591 * 16 14 13 18 18 H 1.08994 * 117.50223 * 107.48554 * 17 16 14 19 19 N 1.46904 * 117.50017 * 252.51122 * 17 16 14 20 20 H 0.97000 * 120.00210 * 359.72456 * 1 2 3 21 21 H 1.09002 * 109.46892 * 300.00109 * 10 9 7 22 22 H 1.09005 * 109.47161 * 59.99890 * 10 9 7 23 23 H 0.97003 * 119.99937 * 359.97438 * 13 11 10 24 24 H 1.09002 * 117.49784 * 214.98046 * 16 14 13 25 25 H 1.09006 * 117.50013 * 359.97438 * 16 14 13 26 26 H 1.00898 * 110.99677 * 248.62280 * 19 17 16 27 27 H 1.00901 * 110.99771 * 12.57219 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0068 5 1 1.8865 2.3994 -1.2091 6 1 1.8967 2.3935 1.2158 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0104 9 16 1.1293 -2.7280 -0.0059 10 6 2.5158 -3.8915 -0.0139 11 6 1.9874 -5.3027 -0.0143 12 8 0.7911 -5.5023 -0.0102 13 7 2.8440 -6.3431 -0.0204 14 6 2.3303 -7.7151 -0.0214 15 1 1.2573 -7.8154 0.1416 16 6 2.9989 -8.7191 -0.9625 17 6 3.2368 -8.8093 0.5461 18 1 2.7602 -9.6296 1.0826 19 7 4.5557 -8.4037 1.0502 20 1 -0.4850 0.8400 0.0040 21 1 3.1210 -3.7294 -0.9058 22 1 3.1279 -3.7334 0.8742 23 1 3.8008 -6.1835 -0.0248 24 1 2.3657 -9.4802 -1.4186 25 1 3.8207 -8.3588 -1.5814 26 1 5.0692 -9.1987 1.3999 27 1 5.0812 -7.9183 0.3386 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701012423.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:08 Heat of formation + Delta-G solvation = -14.287981 kcal Electronic energy + Delta-G solvation = -11907.383233 eV Core-core repulsion = 9599.081364 eV Total energy + Delta-G solvation = -2308.301869 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.067 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.48039 -37.52103 -33.07485 -32.40808 -30.97669 -28.82663 -25.47339 -22.33094 -21.45257 -20.23253 -17.90547 -16.92801 -16.29463 -15.83202 -14.84041 -14.78867 -14.32352 -13.90325 -13.58233 -13.02912 -12.55411 -12.28246 -12.21092 -11.61473 -11.12768 -11.04650 -10.99930 -10.74397 -9.79385 -9.42362 -9.05776 -8.91940 -8.44285 -8.20975 -6.47693 -6.19960 -3.90177 3.01032 3.01431 3.23020 3.29077 3.33755 3.68113 3.79231 4.11134 4.22111 4.72082 4.76650 4.91249 5.12815 5.15274 5.54472 5.57136 5.65995 5.91658 5.95951 6.16863 6.58329 6.82835 7.04221 7.61833 7.74284 8.37390 8.63816 9.25446 10.87550 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.071128 B = 0.005683 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.559896 B = 4925.830398 C = 5197.730164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.536 3.464 12 O -0.518 6.518 13 N -0.702 5.702 14 C 0.098 3.902 15 H 0.139 0.861 16 C -0.236 4.236 17 C 0.021 3.979 18 H 0.124 0.876 19 N -0.812 5.812 20 H 0.268 0.732 21 H 0.089 0.911 22 H 0.091 0.909 23 H 0.399 0.601 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.347 0.653 27 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.624 -15.194 -0.520 17.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.322 3.678 12 O -0.392 6.392 13 N -0.354 5.354 14 C -0.011 4.011 15 H 0.156 0.844 16 C -0.277 4.277 17 C -0.094 4.094 18 H 0.142 0.858 19 N -0.340 5.340 20 H 0.077 0.923 21 H 0.108 0.892 22 H 0.109 0.891 23 H 0.234 0.766 24 H 0.120 0.880 25 H 0.113 0.887 26 H 0.161 0.839 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.066 -14.945 0.040 16.531 hybrid contribution 2.856 0.686 -0.843 3.056 sum 9.921 -14.259 -0.803 17.390 Atomic orbital electron populations 1.70033 1.05947 1.27325 1.46993 1.25001 0.95037 0.99046 0.94567 0.86105 0.79577 0.81856 0.77874 1.19622 1.20594 1.20568 1.22918 0.94969 0.91647 1.58767 0.90855 1.85397 1.04916 0.96303 1.96707 1.23524 1.06603 0.95187 1.04997 1.20326 0.86502 0.86199 0.74739 1.90688 1.15378 1.85506 1.47608 1.45250 1.09725 1.03964 1.76457 1.21846 0.98259 0.79419 1.01545 0.84368 1.24251 1.05015 1.03958 0.94488 1.22877 0.92885 1.00388 0.93217 0.85811 1.58417 1.04310 1.30560 1.40704 0.92252 0.89235 0.89054 0.76639 0.88043 0.88704 0.83894 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.38 13.22 55.49 0.73 -25.65 15 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 15 3 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 15 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 15 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 7 C -0.53 -15.41 9.50 30.94 0.29 -15.12 15 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 15 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 15 10 C -0.15 -3.16 6.16 36.00 0.22 -2.94 15 11 C 0.54 10.40 7.85 -10.99 -0.09 10.31 15 12 O -0.52 -12.07 15.43 5.56 0.09 -11.98 15 13 N -0.70 -10.05 5.45 -53.81 -0.29 -10.34 15 14 C 0.10 1.22 6.43 -67.93 -0.44 0.78 15 15 H 0.14 1.94 7.40 -51.93 -0.38 1.56 15 16 C -0.24 -2.16 10.16 -26.74 -0.27 -2.43 15 17 C 0.02 0.19 7.23 -67.71 -0.49 -0.30 15 18 H 0.12 0.96 8.14 -51.93 -0.42 0.54 15 19 N -0.81 -6.58 9.45 -4.67 -0.04 -6.62 15 20 H 0.27 7.53 8.31 -40.82 -0.34 7.19 15 21 H 0.09 1.70 8.14 -51.92 -0.42 1.28 15 22 H 0.09 1.76 8.14 -51.91 -0.42 1.34 15 23 H 0.40 4.67 7.83 -40.82 -0.32 4.35 15 24 H 0.10 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.09 0.82 8.09 -51.93 -0.42 0.40 15 26 H 0.35 2.07 9.08 -39.29 -0.36 1.71 15 27 H 0.34 2.41 8.13 -39.29 -0.32 2.09 15 LS Contribution 257.02 15.07 3.87 3.87 Total: -1.00 -34.37 257.02 -6.78 -41.15 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -3.03 Total: 4.57 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -0.86 Total: -7.70 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.40 Total: -42.61 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -34.37 -6.78 -41.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012423.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.866 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds