Wall clock time and date at job start Mon Mar 30 2020 02:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86795 * 119.99985 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27752 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27893 * 3 2 1 6 6 H 1.48493 * 109.47327 * 60.27760 * 3 2 1 7 7 C 1.38805 * 119.99846 * 180.28098 * 2 1 3 8 8 H 1.07999 * 119.99864 * 179.72445 * 7 2 1 9 9 S 1.76198 * 119.99843 * 359.71985 * 7 2 1 10 10 C 1.81005 * 99.99931 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47415 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99879 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00401 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00383 * 180.02562 * 13 11 10 15 15 H 1.08998 * 115.54844 * 350.71170 * 14 13 11 16 16 C 1.52994 * 117.50174 * 136.39329 * 14 13 11 17 17 C 1.52993 * 60.00443 * 107.48591 * 16 14 13 18 18 H 1.08994 * 117.50223 * 107.48554 * 17 16 14 19 19 N 1.46904 * 117.50017 * 252.51122 * 17 16 14 20 20 H 0.97000 * 120.00210 * 359.72456 * 1 2 3 21 21 H 1.09002 * 109.46892 * 300.00109 * 10 9 7 22 22 H 1.09005 * 109.47161 * 59.99890 * 10 9 7 23 23 H 0.97003 * 119.99937 * 359.97438 * 13 11 10 24 24 H 1.09002 * 117.49784 * 214.98046 * 16 14 13 25 25 H 1.09006 * 117.50013 * 359.97438 * 16 14 13 26 26 H 1.00898 * 110.99677 * 248.62280 * 19 17 16 27 27 H 1.00901 * 110.99771 * 12.57219 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0068 5 1 1.8865 2.3994 -1.2091 6 1 1.8967 2.3935 1.2158 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0104 9 16 1.1293 -2.7280 -0.0059 10 6 2.5158 -3.8915 -0.0139 11 6 1.9874 -5.3027 -0.0143 12 8 0.7911 -5.5023 -0.0102 13 7 2.8440 -6.3431 -0.0204 14 6 2.3303 -7.7151 -0.0214 15 1 1.2573 -7.8154 0.1416 16 6 2.9989 -8.7191 -0.9625 17 6 3.2368 -8.8093 0.5461 18 1 2.7602 -9.6296 1.0826 19 7 4.5557 -8.4037 1.0502 20 1 -0.4850 0.8400 0.0040 21 1 3.1210 -3.7294 -0.9058 22 1 3.1279 -3.7334 0.8742 23 1 3.8008 -6.1835 -0.0248 24 1 2.3657 -9.4802 -1.4186 25 1 3.8207 -8.3588 -1.5814 26 1 5.0692 -9.1987 1.3999 27 1 5.0812 -7.9183 0.3386 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701012423.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:08 Heat of formation + Delta-G solvation = -42.161665 kcal Electronic energy + Delta-G solvation = -11908.591926 eV Core-core repulsion = 9599.081364 eV Total energy + Delta-G solvation = -2309.510562 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.067 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.78604 -38.62018 -34.59323 -34.33628 -31.86380 -30.32371 -27.67272 -23.30011 -22.43785 -21.45410 -19.88232 -18.20452 -17.42213 -16.91915 -16.87938 -16.38655 -16.00677 -15.01507 -14.75164 -14.53923 -14.10546 -13.74878 -13.16346 -13.03730 -12.91544 -12.61725 -12.48543 -12.16634 -11.71497 -11.15839 -11.01497 -10.28341 -9.86591 -9.32945 -8.67304 -8.34883 -6.13277 1.26043 1.41903 1.46523 1.54760 1.58348 2.21610 2.27642 2.93716 2.99309 3.30442 3.39600 3.85381 3.95725 4.00374 4.16728 4.29275 4.48759 4.82025 4.87290 5.01308 5.42047 5.50702 6.13415 6.20032 6.48715 6.54296 7.06301 7.23691 8.74703 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.071128 B = 0.005683 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.559896 B = 4925.830398 C = 5197.730164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.128 4.128 11 C 0.535 3.465 12 O -0.567 6.567 13 N -0.677 5.677 14 C 0.049 3.951 15 H 0.114 0.886 16 C -0.212 4.212 17 C 0.046 3.954 18 H 0.141 0.859 19 N -0.820 5.820 20 H 0.271 0.729 21 H 0.111 0.889 22 H 0.109 0.891 23 H 0.414 0.586 24 H 0.114 0.886 25 H 0.105 0.895 26 H 0.363 0.637 27 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.330 -15.899 -0.607 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.823 3.177 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.279 4.279 11 C 0.321 3.679 12 O -0.446 6.446 13 N -0.328 5.328 14 C -0.059 4.059 15 H 0.132 0.868 16 C -0.253 4.253 17 C -0.068 4.068 18 H 0.158 0.842 19 N -0.351 5.351 20 H 0.080 0.920 21 H 0.129 0.871 22 H 0.127 0.873 23 H 0.251 0.749 24 H 0.132 0.868 25 H 0.124 0.876 26 H 0.179 0.821 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.841 -15.709 -0.045 18.537 hybrid contribution 2.078 0.743 -0.805 2.349 sum 11.919 -14.966 -0.850 19.151 Atomic orbital electron populations 1.70194 1.07996 1.28579 1.48028 1.26158 0.95999 1.03385 0.93706 0.84872 0.78585 0.76181 0.78091 1.18002 1.19888 1.19896 1.23248 0.95385 0.91948 1.58848 0.89866 1.85581 1.10516 0.99246 1.97045 1.23353 1.03598 0.94189 1.06777 1.20090 0.86250 0.86661 0.74897 1.90672 1.17408 1.86024 1.50463 1.44933 1.09797 1.03852 1.74253 1.22055 0.98151 0.78992 1.06666 0.86819 1.24293 1.04347 1.01816 0.94818 1.22884 0.92461 0.98027 0.93417 0.84167 1.58349 1.04217 1.31555 1.40988 0.91970 0.87130 0.87302 0.74859 0.86766 0.87630 0.82117 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.56 13.22 21.65 0.29 -56.28 15 2 C 0.01 0.70 5.49 84.86 0.47 1.17 15 3 Si 1.00 43.98 29.55 68.60 2.03 46.00 15 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 15 5 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 7 C -0.55 -31.65 9.50 67.96 0.65 -31.00 15 8 H 0.08 4.47 7.80 -2.91 -0.02 4.45 15 9 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 15 10 C -0.13 -5.25 6.16 71.23 0.44 -4.81 15 11 C 0.53 20.78 7.85 87.66 0.69 21.47 15 12 O -0.57 -27.39 15.43 -3.03 -0.05 -27.44 15 13 N -0.68 -18.48 5.45 -442.55 -2.41 -20.89 15 14 C 0.05 1.16 6.43 44.99 0.29 1.45 15 15 H 0.11 3.28 7.40 -2.39 -0.02 3.26 15 16 C -0.21 -3.27 10.16 30.59 0.31 -2.96 15 17 C 0.05 0.71 7.23 44.91 0.32 1.03 15 18 H 0.14 1.72 8.14 -2.39 -0.02 1.70 15 19 N -0.82 -10.59 9.45 -168.68 -1.59 -12.18 15 20 H 0.27 15.55 8.31 -92.71 -0.77 14.78 15 21 H 0.11 4.04 8.14 -2.39 -0.02 4.03 15 22 H 0.11 4.06 8.14 -2.39 -0.02 4.04 15 23 H 0.41 8.67 7.83 -92.71 -0.73 7.94 15 24 H 0.11 1.52 8.14 -2.39 -0.02 1.50 15 25 H 0.11 1.45 8.09 -2.38 -0.02 1.43 15 26 H 0.36 3.02 9.08 -89.70 -0.81 2.21 15 27 H 0.35 3.68 8.13 -89.69 -0.73 2.95 15 Total: -1.00 -76.75 257.02 -0.80 -77.54 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -1.06 Total: 16.63 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 3.16 Total: -13.65 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -3.72 Total: -89.35 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -76.75 -0.80 -77.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012423.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.379 kcal (2) G-P(sol) polarization free energy of solvation -76.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds