Wall clock time and date at job start Mon Mar 30 2020 02:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86806 * 119.99980 * 2 1 4 4 H 1.48500 * 109.46593 * 269.99958 * 3 2 1 5 5 H 1.48492 * 109.46662 * 29.99574 * 3 2 1 6 6 H 1.48495 * 109.47050 * 149.99783 * 3 2 1 7 7 C 1.38807 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99484 * 0.02562 * 7 2 1 9 9 S 1.76196 * 120.00287 * 179.97438 * 7 2 1 10 10 C 1.80988 * 100.00168 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47427 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99917 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00197 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99857 * 179.97438 * 13 11 10 15 15 C 1.53515 * 114.16909 * 155.00126 * 14 13 11 16 16 N 1.47481 * 87.93334 * 87.62155 * 15 14 13 17 17 C 1.47488 * 87.83530 * 27.00963 * 16 15 14 18 18 H 0.96995 * 120.00456 * 0.02562 * 1 2 3 19 19 H 1.09003 * 109.47212 * 60.00520 * 10 9 7 20 20 H 1.09006 * 109.47362 * 300.00373 * 10 9 7 21 21 H 0.97001 * 119.99954 * 359.97438 * 13 11 10 22 22 H 1.08997 * 113.38028 * 21.92573 * 14 13 11 23 23 H 1.09004 * 113.47747 * 332.86059 * 15 14 13 24 24 H 1.08995 * 113.53124 * 202.40120 * 15 14 13 25 25 H 1.00901 * 110.99857 * 138.69928 * 16 15 14 26 26 H 1.08996 * 113.47304 * 87.75121 * 17 16 15 27 27 H 1.08997 * 113.47652 * 218.22256 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0867 -2.9844 0.0001 11 6 5.5731 -3.2324 0.0002 12 8 6.3441 -2.2962 0.0006 13 7 6.0458 -4.4946 -0.0001 14 6 7.4909 -4.7356 -0.0005 15 6 7.9022 -6.0911 0.5911 16 7 7.7264 -6.6710 -0.7535 17 6 8.0273 -5.3374 -1.3069 18 1 -0.4850 0.8400 -0.0004 19 1 3.6435 -3.4317 -0.8896 20 1 3.6440 -3.4314 0.8904 21 1 5.4292 -5.2434 0.0000 22 1 8.0703 -3.8913 0.3730 23 1 7.1954 -6.4767 1.3259 24 1 8.9331 -6.1172 0.9438 25 1 8.4651 -7.3252 -0.9646 26 1 9.0919 -5.1614 -1.4610 27 1 7.4267 -5.0842 -2.1805 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701012960.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:11 Heat of formation + Delta-G solvation = -3.562650 kcal Electronic energy + Delta-G solvation = -12048.666506 eV Core-core repulsion = 9740.829723 eV Total energy + Delta-G solvation = -2307.836783 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.067 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.34203 -38.38774 -33.45405 -32.43041 -29.58900 -26.61195 -26.10228 -25.58131 -20.94300 -19.92906 -17.96445 -17.19467 -16.35330 -15.97225 -15.05548 -14.97836 -14.32766 -13.93589 -13.59423 -13.16635 -12.95880 -12.78843 -12.13471 -11.46753 -11.26054 -11.12148 -11.00027 -10.58860 -9.85649 -9.60229 -9.31560 -9.01618 -8.96196 -8.49728 -6.91213 -6.28082 -3.99893 2.74111 2.91044 3.27138 3.34129 3.51032 3.62751 3.95613 4.30844 4.33901 4.71101 4.75658 4.97241 5.10913 5.13181 5.22210 5.41351 5.52892 5.71812 5.77067 5.78883 6.03440 6.56116 6.87532 7.64003 7.95036 8.42907 8.47678 9.17995 10.81200 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.080385 B = 0.006070 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.239448 B = 4611.454304 C = 4820.164512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.123 4.123 11 C 0.533 3.467 12 O -0.520 6.520 13 N -0.710 5.710 14 C 0.122 3.878 15 C -0.009 4.009 16 N -0.627 5.627 17 C -0.016 4.016 18 H 0.271 0.729 19 H 0.098 0.902 20 H 0.098 0.902 21 H 0.406 0.594 22 H 0.110 0.890 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.319 0.681 26 H 0.074 0.926 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.588 -11.640 0.146 18.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.274 4.274 11 C 0.320 3.680 12 O -0.395 6.395 13 N -0.363 5.363 14 C 0.014 3.986 15 C -0.141 4.141 16 N -0.252 5.252 17 C -0.148 4.148 18 H 0.081 0.919 19 H 0.116 0.884 20 H 0.117 0.883 21 H 0.241 0.759 22 H 0.127 0.873 23 H 0.108 0.892 24 H 0.095 0.905 25 H 0.131 0.869 26 H 0.092 0.908 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.827 -10.141 0.025 17.963 hybrid contribution -0.070 -0.646 0.033 0.651 sum 14.757 -10.787 0.059 18.279 Atomic orbital electron populations 1.69935 1.05924 1.27770 1.48093 1.24718 0.94451 0.98972 0.93186 0.86728 0.81890 0.83264 0.79925 1.19215 1.19951 1.15912 1.22325 0.88264 0.97566 1.58754 0.89350 1.84765 1.09302 1.00028 1.97437 1.23273 0.93782 1.04381 1.05971 1.20348 0.90670 0.82199 0.74820 1.90692 1.58749 1.42212 1.47828 1.45506 1.05989 1.08192 1.76618 1.21858 0.83455 0.97428 0.95841 1.24019 1.01470 0.94412 0.94173 1.67360 1.45761 1.06999 1.05064 1.24153 1.00463 0.90213 0.99989 0.91936 0.88359 0.88342 0.75918 0.87255 0.89187 0.90480 0.86852 0.90819 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.70 13.97 55.49 0.78 -25.93 15 2 C 0.10 2.80 5.50 -17.43 -0.10 2.71 15 3 Si 0.86 21.84 27.74 -169.99 -4.72 17.13 15 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 15 5 H -0.27 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.24 -5.97 6.74 56.52 0.38 -5.59 15 7 C -0.52 -15.11 10.04 30.94 0.31 -14.80 15 8 H 0.09 2.67 8.03 -52.49 -0.42 2.25 15 9 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 15 10 C -0.12 -2.40 6.15 36.01 0.22 -2.18 15 11 C 0.53 9.51 7.85 -10.99 -0.09 9.43 15 12 O -0.52 -11.14 15.46 5.55 0.09 -11.06 15 13 N -0.71 -9.40 5.39 -53.53 -0.29 -9.68 15 14 C 0.12 1.37 4.59 -67.71 -0.31 1.06 15 15 C -0.01 -0.08 8.39 -7.54 -0.06 -0.14 15 16 N -0.63 -5.56 8.71 -122.64 -1.07 -6.63 15 17 C -0.02 -0.16 8.43 -7.53 -0.06 -0.22 15 18 H 0.27 7.62 8.31 -40.82 -0.34 7.28 15 19 H 0.10 1.79 8.14 -51.91 -0.42 1.37 15 20 H 0.10 1.78 8.14 -51.91 -0.42 1.36 15 21 H 0.41 4.59 8.76 -40.82 -0.36 4.24 15 22 H 0.11 1.35 7.45 -51.93 -0.39 0.97 15 23 H 0.09 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 15 25 H 0.32 2.19 8.91 -39.29 -0.35 1.84 15 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 15 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 LS Contribution 252.04 15.07 3.80 3.80 Total: -1.00 -33.24 252.04 -6.70 -39.94 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -3.21 Total: 2.18 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -0.09 Total: -4.15 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.58 Total: -42.24 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.72 Total: 17.13 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -33.24 -6.70 -39.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012960.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.381 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds