Wall clock time and date at job start Mon Mar 30 2020 02:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86806 * 119.99980 * 2 1 4 4 H 1.48500 * 109.46593 * 269.99958 * 3 2 1 5 5 H 1.48492 * 109.46662 * 29.99574 * 3 2 1 6 6 H 1.48495 * 109.47050 * 149.99783 * 3 2 1 7 7 C 1.38807 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99484 * 0.02562 * 7 2 1 9 9 S 1.76196 * 120.00287 * 179.97438 * 7 2 1 10 10 C 1.80988 * 100.00168 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47427 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99917 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00197 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99857 * 179.97438 * 13 11 10 15 15 C 1.53515 * 114.16909 * 155.00126 * 14 13 11 16 16 N 1.47481 * 87.93334 * 87.62155 * 15 14 13 17 17 C 1.47488 * 87.83530 * 27.00963 * 16 15 14 18 18 H 0.96995 * 120.00456 * 0.02562 * 1 2 3 19 19 H 1.09003 * 109.47212 * 60.00520 * 10 9 7 20 20 H 1.09006 * 109.47362 * 300.00373 * 10 9 7 21 21 H 0.97001 * 119.99954 * 359.97438 * 13 11 10 22 22 H 1.08997 * 113.38028 * 21.92573 * 14 13 11 23 23 H 1.09004 * 113.47747 * 332.86059 * 15 14 13 24 24 H 1.08995 * 113.53124 * 202.40120 * 15 14 13 25 25 H 1.00901 * 110.99857 * 138.69928 * 16 15 14 26 26 H 1.08996 * 113.47304 * 87.75121 * 17 16 15 27 27 H 1.08997 * 113.47652 * 218.22256 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0867 -2.9844 0.0001 11 6 5.5731 -3.2324 0.0002 12 8 6.3441 -2.2962 0.0006 13 7 6.0458 -4.4946 -0.0001 14 6 7.4909 -4.7356 -0.0005 15 6 7.9022 -6.0911 0.5911 16 7 7.7264 -6.6710 -0.7535 17 6 8.0273 -5.3374 -1.3069 18 1 -0.4850 0.8400 -0.0004 19 1 3.6435 -3.4317 -0.8896 20 1 3.6440 -3.4314 0.8904 21 1 5.4292 -5.2434 0.0000 22 1 8.0703 -3.8913 0.3730 23 1 7.1954 -6.4767 1.3259 24 1 8.9331 -6.1172 0.9438 25 1 8.4651 -7.3252 -0.9646 26 1 9.0919 -5.1614 -1.4610 27 1 7.4267 -5.0842 -2.1805 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701012960.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:11 Heat of formation + Delta-G solvation = -31.682011 kcal Electronic energy + Delta-G solvation = -12049.885853 eV Core-core repulsion = 9740.829723 eV Total energy + Delta-G solvation = -2309.056130 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.067 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.33679 -39.60184 -34.72992 -34.63909 -31.04432 -27.93547 -27.44797 -26.80400 -22.21478 -20.91052 -19.88265 -18.37225 -17.41719 -17.21875 -17.02994 -16.44651 -15.95083 -15.12914 -14.83436 -14.73080 -14.25718 -13.94385 -13.44940 -13.34041 -13.01092 -12.71654 -12.28675 -11.93862 -11.84593 -11.17213 -11.07609 -10.54848 -10.13208 -9.98326 -9.00097 -8.51687 -6.22817 0.97911 1.31919 1.46642 1.50588 1.55460 2.17322 2.25742 2.70482 2.86483 3.20282 3.50235 3.82622 4.00949 4.22355 4.32391 4.42358 4.46432 4.72001 4.76962 4.81880 5.03703 5.48266 5.70558 6.11371 6.29101 6.45506 6.93239 7.16073 8.60861 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.080385 B = 0.006070 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.239448 B = 4611.454304 C = 4820.164512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.045 3.955 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.236 1.236 7 C -0.531 4.531 8 H 0.061 0.939 9 S -0.172 6.172 10 C -0.112 4.112 11 C 0.539 3.461 12 O -0.561 6.561 13 N -0.689 5.689 14 C 0.100 3.900 15 C 0.007 3.993 16 N -0.637 5.637 17 C -0.009 4.009 18 H 0.277 0.723 19 H 0.112 0.888 20 H 0.114 0.886 21 H 0.417 0.583 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.104 0.896 25 H 0.334 0.666 26 H 0.096 0.904 27 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.313 -12.625 0.277 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.161 4.161 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.159 1.159 7 C -0.678 4.678 8 H 0.080 0.920 9 S 0.055 5.945 10 C -0.263 4.263 11 C 0.324 3.676 12 O -0.439 6.439 13 N -0.341 5.341 14 C -0.006 4.006 15 C -0.124 4.124 16 N -0.263 5.263 17 C -0.141 4.141 18 H 0.087 0.913 19 H 0.130 0.870 20 H 0.132 0.868 21 H 0.254 0.746 22 H 0.115 0.885 23 H 0.111 0.889 24 H 0.122 0.878 25 H 0.148 0.852 26 H 0.115 0.885 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.558 -11.190 0.156 19.985 hybrid contribution -0.567 -0.536 -0.018 0.781 sum 15.991 -11.726 0.138 19.830 Atomic orbital electron populations 1.70014 1.07358 1.29078 1.49120 1.25591 0.95291 1.02347 0.92836 0.85845 0.80693 0.79454 0.80244 1.18673 1.18290 1.15945 1.22475 0.90317 0.96714 1.58336 0.92030 1.84656 1.06353 1.05953 1.97588 1.23263 0.95767 0.99761 1.07467 1.19967 0.89431 0.83252 0.74901 1.90681 1.59216 1.43697 1.50303 1.45295 1.07535 1.06780 1.74520 1.22137 0.81638 0.98761 0.98096 1.23983 1.02972 0.91575 0.93886 1.67322 1.46802 1.06873 1.05260 1.24094 1.01418 0.90371 0.98212 0.91332 0.86999 0.86753 0.74568 0.88501 0.88890 0.87806 0.85224 0.88547 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.23 13.97 21.65 0.30 -55.93 15 2 C 0.04 2.64 5.50 84.86 0.47 3.11 15 3 Si 0.92 45.11 27.74 68.60 1.90 47.01 15 4 H -0.26 -12.59 7.11 99.48 0.71 -11.88 15 5 H -0.26 -11.92 7.11 99.48 0.71 -11.22 15 6 H -0.24 -11.54 6.74 99.48 0.67 -10.87 15 7 C -0.53 -31.14 10.04 67.96 0.68 -30.46 15 8 H 0.06 3.81 8.03 -2.91 -0.02 3.79 15 9 S -0.17 -8.73 18.55 -56.49 -1.05 -9.78 15 10 C -0.11 -4.25 6.15 71.24 0.44 -3.81 15 11 C 0.54 18.63 7.85 87.66 0.69 19.32 15 12 O -0.56 -23.75 15.46 -3.04 -0.05 -23.80 15 13 N -0.69 -16.99 5.39 -441.67 -2.38 -19.36 15 14 C 0.10 2.04 4.59 45.45 0.21 2.25 15 15 C 0.01 0.09 8.39 83.58 0.70 0.79 15 16 N -0.64 -9.32 8.71 -541.93 -4.72 -14.04 15 17 C -0.01 -0.16 8.43 83.58 0.70 0.55 15 18 H 0.28 15.67 8.31 -92.71 -0.77 14.90 15 19 H 0.11 3.96 8.14 -2.39 -0.02 3.94 15 20 H 0.11 3.99 8.14 -2.39 -0.02 3.97 15 21 H 0.42 8.47 8.76 -92.71 -0.81 7.66 15 22 H 0.10 2.27 7.45 -2.39 -0.02 2.25 15 23 H 0.09 1.23 8.14 -2.39 -0.02 1.21 15 24 H 0.10 0.89 8.14 -2.39 -0.02 0.87 15 25 H 0.33 3.43 8.91 -89.69 -0.80 2.63 15 26 H 0.10 1.20 8.14 -2.39 -0.02 1.19 15 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 15 Total: -1.00 -71.69 252.04 -2.56 -74.24 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -0.46 Total: 9.92 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 3.89 Total: -8.26 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -6.80 Total: -89.33 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.05 Total: -23.80 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.90 Total: 47.01 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.05 Total: -9.78 kcal Total: -71.69 -2.56 -74.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012960.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.561 kcal (2) G-P(sol) polarization free energy of solvation -71.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds