Wall clock time and date at job start Mon Mar 30 2020 02:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47476 * 2 1 4 4 C 1.52998 * 109.47242 * 120.00582 * 2 1 3 5 5 C 1.50707 * 109.47131 * 184.99582 * 4 2 1 6 6 H 1.08006 * 119.99752 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99990 * 179.97438 * 5 4 2 8 8 N 1.31507 * 119.99990 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99798 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47209 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47129 * 120.00433 * 9 7 5 12 12 H 1.48501 * 109.47203 * 240.00529 * 9 7 5 13 13 S 1.81402 * 109.46848 * 240.00355 * 2 1 3 14 14 C 1.81404 * 103.00044 * 64.99956 * 13 2 1 15 15 H 1.09002 * 110.80265 * 305.70039 * 14 13 2 16 16 C 1.54817 * 110.90795 * 182.07169 * 14 13 2 17 17 C 1.54100 * 104.18606 * 220.88567 * 16 14 13 18 18 O 1.43746 * 107.29659 * 357.97343 * 17 16 14 19 19 C 1.44478 * 106.98554 * 26.51171 * 18 17 16 20 20 H 1.08997 * 109.47476 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.47058 * 299.99648 * 1 2 3 22 22 H 1.09000 * 109.47381 * 59.99599 * 1 2 3 23 23 H 1.08996 * 109.46976 * 304.99787 * 4 2 1 24 24 H 1.08998 * 109.47360 * 65.00001 * 4 2 1 25 25 H 0.97008 * 120.00087 * 179.97438 * 8 7 5 26 26 H 1.08991 * 110.48506 * 339.56162 * 16 14 13 27 27 H 1.08998 * 110.48536 * 102.20873 * 16 14 13 28 28 H 1.09002 * 109.87699 * 117.39650 * 17 16 14 29 29 H 1.08999 * 109.87889 * 238.54603 * 17 16 14 30 30 H 1.08997 * 110.65764 * 201.45460 * 19 18 17 31 31 H 1.08997 * 110.61802 * 78.42806 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5420 -0.6151 1.3125 6 1 4.0790 -0.0856 0.5394 7 6 4.2304 -1.1929 2.3581 8 7 3.5765 -1.8372 3.2997 9 14 6.0920 -1.0606 2.4370 10 1 6.5836 -0.2901 1.2664 11 1 6.4862 -0.3645 3.6881 12 1 6.6862 -2.4214 2.4194 13 16 2.1346 -0.8551 -1.4812 14 6 1.5663 0.2155 -2.8309 15 1 0.4915 0.3848 -2.7645 16 6 1.9474 -0.3816 -4.2075 17 6 2.4051 0.8361 -5.0337 18 8 2.2412 2.0000 -4.2062 19 6 2.3388 1.5592 -2.8337 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.6054 -0.2619 2.1369 24 1 1.7517 -1.7716 1.2054 25 1 4.0609 -2.2441 4.0351 26 1 2.7619 -1.0978 -4.1003 27 1 1.0815 -0.8538 -4.6715 28 1 3.4532 0.7231 -5.3109 29 1 1.7906 0.9285 -5.9292 30 1 1.8635 2.2766 -2.1648 31 1 3.3806 1.4036 -2.5538 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703057822.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:18 Heat of formation + Delta-G solvation = -66.035430 kcal Electronic energy + Delta-G solvation = -12687.241285 eV Core-core repulsion = 10480.235822 eV Total energy + Delta-G solvation = -2207.005463 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.05592 -34.56592 -32.20242 -31.90421 -29.13693 -27.46249 -23.36188 -22.74288 -21.65617 -20.26312 -16.72883 -16.42785 -16.29430 -15.35462 -14.85312 -14.51959 -13.97693 -13.31771 -13.23278 -12.52748 -12.29491 -11.85200 -11.62335 -11.56036 -11.48117 -11.02121 -10.90217 -10.62970 -10.49336 -10.13921 -9.68094 -9.45521 -9.22828 -8.99828 -8.36502 -6.98453 -6.01454 -4.02333 2.22201 3.25209 3.32472 3.39952 3.45193 4.05725 4.46851 4.57745 4.80753 5.00871 5.21520 5.30670 5.36237 5.62621 5.68022 5.71602 5.73230 5.88477 5.90455 5.94837 6.06521 6.33198 6.57831 6.69493 6.83359 7.51282 7.61569 7.96259 8.34318 9.02653 9.61312 11.10102 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.036007 B = 0.008192 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.439334 B = 3417.284405 C = 3858.194190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 H 0.074 0.926 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.284 1.284 13 S -0.211 6.211 14 C -0.114 4.114 15 H 0.092 0.908 16 C -0.131 4.131 17 C 0.051 3.949 18 O -0.382 6.382 19 C 0.056 3.944 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.040 0.960 23 H 0.033 0.967 24 H 0.026 0.974 25 H 0.260 0.740 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 3.983 -12.333 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 H 0.093 0.907 4 C 0.001 3.999 5 C -0.552 4.552 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.210 1.210 13 S 0.018 5.982 14 C -0.243 4.243 15 H 0.110 0.890 16 C -0.169 4.169 17 C -0.027 4.027 18 O -0.302 6.302 19 C -0.022 4.022 20 H 0.081 0.919 21 H 0.079 0.921 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.810 3.136 -12.308 13.260 hybrid contribution 0.315 0.857 0.385 0.991 sum -3.496 3.993 -11.923 13.051 Atomic orbital electron populations 1.22117 0.95358 1.02267 1.00684 1.23418 0.96009 1.01497 0.96533 0.90748 1.19027 0.96533 0.95631 0.88736 1.21281 0.91525 1.34351 1.08019 0.91807 1.24989 0.98445 0.95288 0.95654 1.69966 1.35481 1.36083 1.12148 0.86532 0.85812 0.77820 0.77901 1.19559 1.21134 1.21038 1.87201 1.75185 1.36574 0.99200 1.24768 1.02904 0.98584 0.98040 0.89016 1.22743 1.02621 0.98517 0.93026 1.23132 1.00618 0.84715 0.94233 1.88843 1.93979 1.30490 1.16846 1.24042 1.00524 0.94161 0.83517 0.91915 0.92117 0.94066 0.94939 0.95569 0.93049 0.89623 0.90086 0.92243 0.90021 0.89030 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.10 37.16 0.34 -2.08 16 2 C -0.05 -0.92 2.72 -26.73 -0.07 -1.00 16 3 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 4 C 0.04 0.97 4.45 -27.88 -0.12 0.85 16 5 C -0.51 -14.21 8.53 -34.44 -0.29 -14.51 16 6 H 0.06 1.75 7.60 -52.48 -0.40 1.35 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 S -0.21 -4.02 19.77 -107.50 -2.13 -6.14 16 14 C -0.11 -1.69 3.39 -24.72 -0.08 -1.77 16 15 H 0.09 1.31 6.98 -51.93 -0.36 0.94 16 16 C -0.13 -1.63 6.62 -25.20 -0.17 -1.80 16 17 C 0.05 0.60 7.70 37.73 0.29 0.89 16 18 O -0.38 -5.63 11.52 -35.23 -0.41 -6.04 16 19 C 0.06 0.83 7.15 38.21 0.27 1.11 16 20 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.04 0.60 6.82 -51.93 -0.35 0.24 16 23 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.09 1.11 7.82 -51.93 -0.41 0.71 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 LS Contribution 269.41 15.07 4.06 4.06 Total: -1.00 -29.78 269.41 -7.57 -37.35 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -4.88 Total: -3.20 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 0.06 Total: -16.77 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.74 Total: -26.02 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.41 Total: -6.04 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -4.02 SS G_CDS: -2.13 Total: -6.14 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.78 -7.57 -37.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703057822.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.687 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds