Wall clock time and date at job start Mon Mar 30 2020 02:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99977 * 2 1 4 4 H 1.48503 * 109.47120 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47405 * 300.00221 * 3 2 1 6 6 H 1.48504 * 109.47207 * 59.99984 * 3 2 1 7 7 C 1.37870 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00292 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00263 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47215 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47088 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47455 * 179.97438 * 11 10 9 13 13 C 1.81396 * 103.00260 * 179.97438 * 12 11 10 14 14 H 1.08997 * 110.81007 * 302.82781 * 13 12 11 15 15 C 1.54806 * 110.93904 * 179.17259 * 13 12 11 16 16 C 1.54099 * 104.19470 * 220.91070 * 15 13 12 17 17 O 1.43889 * 107.37252 * 358.10337 * 16 15 13 18 18 C 1.44388 * 106.89814 * 26.27302 * 17 16 15 19 19 H 0.97000 * 119.99591 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.46863 * 59.99986 * 9 7 2 21 21 H 1.09000 * 109.46694 * 300.00452 * 9 7 2 22 22 H 1.08997 * 109.47509 * 59.99513 * 10 9 7 23 23 H 1.09009 * 109.47050 * 299.99698 * 10 9 7 24 24 H 1.08997 * 109.47507 * 59.99312 * 11 10 9 25 25 H 1.09007 * 109.47250 * 299.99865 * 11 10 9 26 26 H 1.09002 * 110.48575 * 339.59187 * 15 13 12 27 27 H 1.09005 * 110.48375 * 102.23501 * 15 13 12 28 28 H 1.09001 * 109.87936 * 117.39322 * 16 15 13 29 29 H 1.09001 * 109.88030 * 238.55007 * 16 15 13 30 30 H 1.09002 * 110.61854 * 201.57804 * 18 17 16 31 31 H 1.09000 * 110.62045 * 78.73713 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 16 2.6590 -6.3659 -0.0019 13 6 1.5807 -7.8246 -0.0019 14 1 0.9067 -7.8079 0.8546 15 6 2.4144 -9.1288 -0.0233 16 6 1.6549 -10.0467 -1.0008 17 8 0.4850 -9.3330 -1.4393 18 6 0.7863 -7.9252 -1.3290 19 1 -0.4849 0.8401 -0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5570 0.8897 22 1 2.8720 -3.6044 0.8894 23 1 2.8719 -3.6044 -0.8906 24 1 0.8538 -5.0445 -0.8913 25 1 0.8533 -5.0451 0.8886 26 1 3.4219 -8.9316 -0.3898 27 1 2.4495 -9.5756 0.9703 28 1 2.2870 -10.2792 -1.8579 29 1 1.3615 -10.9660 -0.4939 30 1 -0.1313 -7.3396 -1.2725 31 1 1.3987 -7.5968 -2.1688 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705525246.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:48 Heat of formation + Delta-G solvation = -70.823189 kcal Electronic energy + Delta-G solvation = -12113.160518 eV Core-core repulsion = 9905.947442 eV Total energy + Delta-G solvation = -2207.213076 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.31239 -34.49313 -32.32135 -32.05856 -29.45676 -27.44896 -23.50389 -23.06353 -21.68921 -20.19149 -17.07556 -16.70010 -16.29016 -15.42321 -15.05569 -14.54497 -14.45860 -13.92494 -13.33452 -12.60019 -12.48606 -12.02800 -11.82515 -11.78289 -11.44868 -11.12507 -10.91179 -10.86531 -10.48300 -9.92026 -9.82849 -9.77815 -9.32879 -9.11119 -8.38975 -7.55471 -6.03697 -4.06307 1.73637 2.73368 3.29911 3.37462 3.42082 3.79362 4.28051 4.43988 4.53553 4.75208 4.94065 5.03346 5.32416 5.43402 5.46315 5.48208 5.58761 5.60147 5.65393 5.76989 6.07858 6.51066 6.58586 6.67542 6.98269 7.61020 7.72587 7.95128 8.36766 9.00338 9.58214 11.07700 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.082066 B = 0.004770 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.107610 B = 5869.060443 C = 6086.065596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.095 4.095 11 C -0.075 4.075 12 S -0.256 6.256 13 C -0.098 4.098 14 H 0.099 0.901 15 C -0.131 4.131 16 C 0.050 3.950 17 O -0.377 6.377 18 C 0.053 3.947 19 H 0.260 0.740 20 H 0.018 0.982 21 H 0.018 0.982 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 -17.015 -0.685 17.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.134 4.134 11 C -0.223 4.223 12 S -0.027 6.027 13 C -0.227 4.227 14 H 0.117 0.883 15 C -0.170 4.170 16 C -0.028 4.028 17 O -0.296 6.296 18 C -0.025 4.025 19 H 0.070 0.930 20 H 0.036 0.964 21 H 0.036 0.964 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.704 -16.974 -0.743 17.390 hybrid contribution -0.743 1.031 0.170 1.282 sum 2.961 -15.943 -0.573 16.226 Atomic orbital electron populations 1.69975 1.06081 1.26590 1.50858 1.25022 0.94864 0.99328 0.95223 0.86515 0.80148 0.83632 0.77603 1.19669 1.20965 1.20981 1.21255 0.93160 0.90834 1.50628 0.92485 1.19113 0.93802 0.90862 0.97438 1.21475 0.99179 0.91153 1.01613 1.23677 0.98885 0.95266 1.04503 1.86863 1.17720 1.00316 1.97811 1.24703 0.99727 0.96488 1.01827 0.88306 1.22779 0.99904 0.93037 1.01269 1.23187 0.87236 0.95581 0.96801 1.88905 1.36120 1.17465 1.87152 1.24034 1.00200 0.82931 0.95343 0.93000 0.96377 0.96413 0.92358 0.92345 0.90426 0.90425 0.89579 0.89684 0.92043 0.89677 0.88582 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 10 C -0.10 -1.96 5.16 -26.74 -0.14 -2.10 16 11 C -0.08 -1.27 5.82 37.15 0.22 -1.06 16 12 S -0.26 -3.83 21.07 -107.50 -2.26 -6.09 16 13 C -0.10 -1.18 3.65 -24.72 -0.09 -1.27 16 14 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 15 C -0.13 -1.28 6.62 -25.21 -0.17 -1.45 16 16 C 0.05 0.47 7.70 37.73 0.29 0.76 16 17 O -0.38 -4.72 11.54 -35.23 -0.41 -5.13 16 18 C 0.05 0.64 7.06 38.21 0.27 0.91 16 19 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 20 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 26 H 0.09 0.85 7.82 -51.93 -0.41 0.44 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 LS Contribution 273.77 15.07 4.13 4.13 Total: -1.00 -29.95 273.77 -8.01 -37.97 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -5.02 Total: -4.27 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -0.17 Total: -17.14 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.41 Total: -5.13 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -3.83 SS G_CDS: -2.26 Total: -6.09 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.95 -8.01 -37.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705525246.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.856 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds