Wall clock time and date at job start Mon Mar 30 2020 02:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99977 * 2 1 4 4 H 1.48503 * 109.47120 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47405 * 300.00221 * 3 2 1 6 6 H 1.48504 * 109.47207 * 59.99984 * 3 2 1 7 7 C 1.37870 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00292 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00263 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47215 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47088 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47455 * 179.97438 * 11 10 9 13 13 C 1.81396 * 103.00260 * 179.97438 * 12 11 10 14 14 H 1.08997 * 110.81007 * 302.82781 * 13 12 11 15 15 C 1.54806 * 110.93904 * 179.17259 * 13 12 11 16 16 C 1.54099 * 104.19470 * 220.91070 * 15 13 12 17 17 O 1.43889 * 107.37252 * 358.10337 * 16 15 13 18 18 C 1.44388 * 106.89814 * 26.27302 * 17 16 15 19 19 H 0.97000 * 119.99591 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.46863 * 59.99986 * 9 7 2 21 21 H 1.09000 * 109.46694 * 300.00452 * 9 7 2 22 22 H 1.08997 * 109.47509 * 59.99513 * 10 9 7 23 23 H 1.09009 * 109.47050 * 299.99698 * 10 9 7 24 24 H 1.08997 * 109.47507 * 59.99312 * 11 10 9 25 25 H 1.09007 * 109.47250 * 299.99865 * 11 10 9 26 26 H 1.09002 * 110.48575 * 339.59187 * 15 13 12 27 27 H 1.09005 * 110.48375 * 102.23501 * 15 13 12 28 28 H 1.09001 * 109.87936 * 117.39322 * 16 15 13 29 29 H 1.09001 * 109.88030 * 238.55007 * 16 15 13 30 30 H 1.09002 * 110.61854 * 201.57804 * 18 17 16 31 31 H 1.09000 * 110.62045 * 78.73713 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 16 2.6590 -6.3659 -0.0019 13 6 1.5807 -7.8246 -0.0019 14 1 0.9067 -7.8079 0.8546 15 6 2.4144 -9.1288 -0.0233 16 6 1.6549 -10.0467 -1.0008 17 8 0.4850 -9.3330 -1.4393 18 6 0.7863 -7.9252 -1.3290 19 1 -0.4849 0.8401 -0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5570 0.8897 22 1 2.8720 -3.6044 0.8894 23 1 2.8719 -3.6044 -0.8906 24 1 0.8538 -5.0445 -0.8913 25 1 0.8533 -5.0451 0.8886 26 1 3.4219 -8.9316 -0.3898 27 1 2.4495 -9.5756 0.9703 28 1 2.2870 -10.2792 -1.8579 29 1 1.3615 -10.9660 -0.4939 30 1 -0.1313 -7.3396 -1.2725 31 1 1.3987 -7.5968 -2.1688 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705525246.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:48 Heat of formation + Delta-G solvation = -88.330939 kcal Electronic energy + Delta-G solvation = -12113.919711 eV Core-core repulsion = 9905.947442 eV Total energy + Delta-G solvation = -2207.972269 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.18864 -36.38082 -34.06614 -33.21391 -30.36164 -29.31288 -25.40783 -23.94025 -22.78223 -21.81747 -18.58163 -17.98893 -17.49598 -16.66295 -16.42004 -16.16516 -15.88427 -14.92529 -14.53011 -14.27826 -13.95696 -13.63163 -13.16972 -12.88667 -12.78216 -12.68035 -12.51212 -12.27846 -11.96634 -11.67191 -11.36786 -11.10751 -10.88416 -10.75698 -10.57629 -8.75051 -8.22063 -6.33118 0.57995 1.40268 1.40672 1.51091 1.54290 2.40679 2.94185 3.11656 3.42182 3.64745 3.94972 4.01625 4.07967 4.15120 4.18890 4.54562 4.58821 4.69986 4.79527 4.79930 4.87460 4.95372 5.00832 5.12034 5.48036 5.66703 5.74676 5.81238 6.21239 6.82840 7.36422 8.89934 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.082066 B = 0.004770 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.107610 B = 5869.060443 C = 6086.065596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.029 3.971 10 C -0.081 4.081 11 C -0.073 4.073 12 S -0.260 6.260 13 C -0.093 4.093 14 H 0.103 0.897 15 C -0.126 4.126 16 C 0.046 3.954 17 O -0.395 6.395 18 C 0.053 3.947 19 H 0.264 0.736 20 H -0.003 1.003 21 H -0.004 1.004 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.914 -17.878 -0.564 18.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.009 4.009 10 C -0.120 4.120 11 C -0.221 4.221 12 S -0.031 6.031 13 C -0.222 4.222 14 H 0.121 0.879 15 C -0.165 4.165 16 C -0.031 4.031 17 O -0.315 6.315 18 C -0.025 4.025 19 H 0.073 0.927 20 H 0.016 0.984 21 H 0.015 0.985 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.704 -17.843 -0.621 18.464 hybrid contribution -1.064 1.199 0.128 1.608 sum 3.641 -16.645 -0.494 17.045 Atomic orbital electron populations 1.70094 1.07745 1.27795 1.51623 1.25956 0.95776 1.03312 0.94615 0.85395 0.79052 0.78733 0.77856 1.18686 1.20269 1.20291 1.21695 0.93565 0.92310 1.50674 0.92274 1.18995 0.94200 0.92428 0.95313 1.21173 0.98015 0.91475 1.01337 1.23408 0.99003 0.94804 1.04869 1.86801 1.17673 1.00763 1.97861 1.24789 0.99632 0.95722 1.02049 0.87876 1.22810 0.99448 0.91690 1.02517 1.23395 0.86540 0.95851 0.97313 1.88892 1.37608 1.17515 1.87461 1.23995 1.00148 0.83156 0.95221 0.92691 0.98439 0.98532 0.92588 0.92509 0.90034 0.90224 0.89551 0.87847 0.91013 0.87575 0.88668 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 2 C 0.00 0.07 5.46 84.65 0.46 0.54 16 3 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.54 -31.11 9.11 25.60 0.23 -30.87 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.54 4.97 29.85 0.15 1.69 16 10 C -0.08 -3.37 5.16 30.59 0.16 -3.21 16 11 C -0.07 -2.44 5.82 71.98 0.42 -2.02 16 12 S -0.26 -7.42 21.07 -56.49 -1.19 -8.61 16 13 C -0.09 -2.06 3.65 31.90 0.12 -1.94 16 14 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 15 C -0.13 -2.13 6.62 31.58 0.21 -1.92 16 16 C 0.05 0.75 7.70 72.35 0.56 1.31 16 17 O -0.40 -9.17 11.54 -148.98 -1.72 -10.89 16 18 C 0.05 1.22 7.06 72.67 0.51 1.73 16 19 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 20 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 21 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 22 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 24 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.09 1.48 7.82 -2.39 -0.02 1.46 16 27 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.07 1.70 8.04 -2.39 -0.02 1.68 16 Total: -1.00 -63.53 273.77 3.30 -60.24 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: 1.08 Total: 3.89 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: 2.82 Total: -34.69 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.28 Total: -56.22 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -1.72 Total: -10.89 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -7.42 SS G_CDS: -1.19 Total: -8.61 kcal Total: -63.53 3.30 -60.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705525246.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.095 kcal (2) G-P(sol) polarization free energy of solvation -63.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds