Wall clock time and date at job start Mon Mar 30 2020 02:45:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86797 * 120.00353 * 2 1
4 4 H 1.48500 * 109.47490 * 239.99959 * 3 2 1
5 5 H 1.48503 * 109.46722 * 359.97438 * 3 2 1
6 6 H 1.48495 * 109.47499 * 119.99451 * 3 2 1
7 7 C 1.37883 * 119.99871 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00000 * 180.02562 * 7 2 1
9 9 C 1.50692 * 119.99903 * 0.02562 * 7 2 1
10 10 C 1.53008 * 109.46927 * 179.97438 * 9 7 2
11 11 C 1.52999 * 109.46821 * 179.97438 * 10 9 7
12 12 S 1.81399 * 109.46849 * 180.02562 * 11 10 9
13 13 C 1.81399 * 103.00059 * 179.97438 * 12 11 10
14 14 H 1.09000 * 110.75220 * 57.01980 * 13 12 11
15 15 C 1.55300 * 110.84912 * 180.71208 * 13 12 11
16 16 C 1.54949 * 100.94457 * 152.32612 * 15 13 12
17 17 O 1.43645 * 105.13450 * 323.55307 * 16 15 13
18 18 C 1.43250 * 109.97058 * 24.42938 * 17 16 15
19 19 H 0.97005 * 119.99907 * 0.02562 * 1 2 3
20 20 H 1.09000 * 109.47701 * 59.99764 * 9 7 2
21 21 H 1.09006 * 109.47188 * 299.99070 * 9 7 2
22 22 H 1.08996 * 109.47090 * 60.00021 * 10 9 7
23 23 H 1.08993 * 109.46800 * 299.99425 * 10 9 7
24 24 H 1.08994 * 109.47772 * 59.99662 * 11 10 9
25 25 H 1.09006 * 109.47299 * 299.99347 * 11 10 9
26 26 H 1.09006 * 111.12931 * 270.24274 * 15 13 12
27 27 H 1.08995 * 111.13001 * 34.40442 * 15 13 12
28 28 H 1.08996 * 110.30909 * 204.64176 * 16 15 13
29 29 H 1.09000 * 110.39419 * 82.51266 * 16 15 13
30 30 H 1.08989 * 109.82916 * 238.77561 * 18 17 16
31 31 H 1.08992 * 109.90475 * 117.84425 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1030 1.6963 -1.2125
5 1 1.2841 2.7464 -0.0006
6 1 3.1028 1.6964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4991 0.0005
10 6 2.2453 -3.6621 0.0005
11 6 1.4802 -4.9871 0.0012
12 16 2.6590 -6.3659 0.0019
13 6 1.5807 -7.8246 0.0034
14 1 0.9047 -7.8061 -0.8514
15 6 2.4191 -9.1317 0.0223
16 6 1.4371 -10.1010 0.7273
17 8 0.7643 -9.3018 1.7132
18 6 0.7910 -7.9228 1.3264
19 1 -0.4850 0.8401 -0.0004
20 1 0.6246 -2.5571 -0.8896
21 1 0.6240 -2.5567 0.8904
22 1 2.8719 -3.6044 0.8905
23 1 2.8718 -3.6044 -0.8895
24 1 0.8532 -5.0451 -0.8885
25 1 0.8539 -5.0446 0.8915
26 1 2.6448 -9.4684 -0.9896
27 1 3.3317 -9.0047 0.6046
28 1 1.9851 -10.9117 1.2073
29 1 0.7196 -10.5019 0.0114
30 1 1.2859 -7.3321 2.0971
31 1 -0.2258 -7.5593 1.1780
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000705525247.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:50
Heat of formation + Delta-G solvation = -70.439788 kcal
Electronic energy + Delta-G solvation = -12114.132682 eV
Core-core repulsion = 9906.936232 eV
Total energy + Delta-G solvation = -2207.196450 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 216.093 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-39.33851 -34.49333 -32.34909 -32.05868 -29.52807 -27.45338 -23.51948 -22.78376
-21.91737 -20.21841 -17.23020 -16.70126 -16.28448 -15.37396 -14.82770 -14.58293
-14.46840 -13.98541 -13.41928 -12.58733 -12.47500 -12.08416 -11.86401 -11.72404
-11.36909 -11.32167 -10.88562 -10.86993 -10.52463 -9.92588 -9.82349 -9.61151
-9.32433 -9.13463 -8.38136 -7.55291 -6.03229 -4.05980 1.71912 2.72366
3.32782 3.36881 3.39805 3.69635 4.16491 4.44167 4.62310 4.75212
4.92454 5.00180 5.32658 5.42332 5.45379 5.46504 5.56250 5.59460
5.66764 5.82785 6.07438 6.51038 6.67257 6.74122 6.98222 7.60677
7.72693 7.95245 8.36993 9.00133 9.58325 11.08085
Molecular weight = 216.09amu
Principal moments of inertia in cm(-1)
A = 0.082736 B = 0.004760 C = 0.004603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 338.345110 B = 5881.134133 C = 6081.991233
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.058 3.942
3 Si 0.894 3.106
4 H -0.276 1.276
5 H -0.287 1.287
6 H -0.276 1.276
7 C -0.522 4.522
8 H 0.056 0.944
9 C 0.028 3.972
10 C -0.095 4.095
11 C -0.076 4.076
12 S -0.253 6.253
13 C -0.100 4.100
14 H 0.098 0.902
15 C -0.131 4.131
16 C 0.054 3.946
17 O -0.383 6.383
18 C 0.057 3.943
19 H 0.262 0.738
20 H 0.017 0.983
21 H 0.018 0.982
22 H 0.058 0.942
23 H 0.058 0.942
24 H 0.077 0.923
25 H 0.077 0.923
26 H 0.090 0.910
27 H 0.089 0.911
28 H 0.088 0.912
29 H 0.062 0.938
30 H 0.085 0.915
31 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.397 -17.200 -0.170 17.367
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.144 4.144
3 Si 0.722 3.278
4 H -0.202 1.202
5 H -0.213 1.213
6 H -0.202 1.202
7 C -0.561 4.561
8 H 0.074 0.926
9 C -0.011 4.011
10 C -0.134 4.134
11 C -0.224 4.224
12 S -0.023 6.023
13 C -0.230 4.230
14 H 0.117 0.883
15 C -0.169 4.169
16 C -0.023 4.023
17 O -0.302 6.302
18 C -0.022 4.022
19 H 0.071 0.929
20 H 0.036 0.964
21 H 0.036 0.964
22 H 0.077 0.923
23 H 0.076 0.924
24 H 0.096 0.904
25 H 0.096 0.904
26 H 0.109 0.891
27 H 0.107 0.893
28 H 0.106 0.894
29 H 0.080 0.920
30 H 0.103 0.897
31 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 3.265 -17.127 -0.002 17.435
hybrid contribution -0.878 1.039 -0.315 1.397
sum 2.387 -16.087 -0.317 16.267
Atomic orbital electron populations
1.69950 1.06087 1.26820 1.50650 1.25017 0.94863 0.99303 0.95190
0.86624 0.79566 0.82941 0.78692 1.20191 1.21258 1.20169 1.21178
0.93087 0.90855 1.50930 0.92589 1.19100 0.93781 0.90821 0.97418
1.21478 0.99191 0.91135 1.01625 1.23686 0.98901 0.95288 1.04511
1.86891 1.17534 1.00131 1.97781 1.24698 0.99852 0.97192 1.01210
0.88342 1.23110 0.99013 0.92083 1.02710 1.23379 0.93794 0.94121
0.91032 1.88400 1.78203 1.17432 1.46178 1.23662 1.00082 0.83595
0.94853 0.92883 0.96436 0.96388 0.92318 0.92354 0.90449 0.90396
0.89148 0.89286 0.89390 0.92022 0.89707 0.91045
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16
2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16
4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16
8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16
9 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16
10 C -0.10 -1.97 5.16 -26.73 -0.14 -2.10 16
11 C -0.08 -1.29 5.82 37.16 0.22 -1.07 16
12 S -0.25 -3.80 21.02 -107.50 -2.26 -6.06 16
13 C -0.10 -1.19 3.52 -24.79 -0.09 -1.28 16
14 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16
15 C -0.13 -1.27 6.63 -24.48 -0.16 -1.43 16
16 C 0.05 0.51 7.78 38.19 0.30 0.80 16
17 O -0.38 -4.86 11.36 -35.23 -0.40 -5.26 16
18 C 0.06 0.70 7.30 37.88 0.28 0.98 16
19 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
20 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16
21 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
22 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16
23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
24 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16
25 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16
26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16
27 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16
28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16
30 H 0.08 1.11 7.77 -51.94 -0.40 0.71 16
31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
LS Contribution 273.68 15.07 4.12 4.12
Total: -1.00 -30.02 273.68 -7.98 -38.00
By element:
Atomic # 1 Polarization: 0.73 SS G_CDS: -5.01 Total: -4.29 kcal
Atomic # 6 Polarization: -16.92 SS G_CDS: -0.15 Total: -17.07 kcal
Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.06 kcal
Atomic # 8 Polarization: -4.86 SS G_CDS: -0.40 Total: -5.26 kcal
Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal
Atomic # 16 Polarization: -3.80 SS G_CDS: -2.26 Total: -6.06 kcal
Total LS contribution 4.12 Total: 4.12 kcal
Total: -30.02 -7.98 -38.00 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000705525247.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.442 kcal
(2) G-P(sol) polarization free energy of solvation -30.018 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.460 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.440 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds