Wall clock time and date at job start Mon Mar 30 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48500 * 109.47490 * 239.99959 * 3 2 1 5 5 H 1.48503 * 109.46722 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47499 * 119.99451 * 3 2 1 7 7 C 1.37883 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00000 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46927 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46821 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.46849 * 180.02562 * 11 10 9 13 13 C 1.81399 * 103.00059 * 179.97438 * 12 11 10 14 14 H 1.09000 * 110.75220 * 57.01980 * 13 12 11 15 15 C 1.55300 * 110.84912 * 180.71208 * 13 12 11 16 16 C 1.54949 * 100.94457 * 152.32612 * 15 13 12 17 17 O 1.43645 * 105.13450 * 323.55307 * 16 15 13 18 18 C 1.43250 * 109.97058 * 24.42938 * 17 16 15 19 19 H 0.97005 * 119.99907 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47701 * 59.99764 * 9 7 2 21 21 H 1.09006 * 109.47188 * 299.99070 * 9 7 2 22 22 H 1.08996 * 109.47090 * 60.00021 * 10 9 7 23 23 H 1.08993 * 109.46800 * 299.99425 * 10 9 7 24 24 H 1.08994 * 109.47772 * 59.99662 * 11 10 9 25 25 H 1.09006 * 109.47299 * 299.99347 * 11 10 9 26 26 H 1.09006 * 111.12931 * 270.24274 * 15 13 12 27 27 H 1.08995 * 111.13001 * 34.40442 * 15 13 12 28 28 H 1.08996 * 110.30909 * 204.64176 * 16 15 13 29 29 H 1.09000 * 110.39419 * 82.51266 * 16 15 13 30 30 H 1.08989 * 109.82916 * 238.77561 * 18 17 16 31 31 H 1.08992 * 109.90475 * 117.84425 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 16 2.6590 -6.3659 0.0019 13 6 1.5807 -7.8246 0.0034 14 1 0.9047 -7.8061 -0.8514 15 6 2.4191 -9.1317 0.0223 16 6 1.4371 -10.1010 0.7273 17 8 0.7643 -9.3018 1.7132 18 6 0.7910 -7.9228 1.3264 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8904 22 1 2.8719 -3.6044 0.8905 23 1 2.8718 -3.6044 -0.8895 24 1 0.8532 -5.0451 -0.8885 25 1 0.8539 -5.0446 0.8915 26 1 2.6448 -9.4684 -0.9896 27 1 3.3317 -9.0047 0.6046 28 1 1.9851 -10.9117 1.2073 29 1 0.7196 -10.5019 0.0114 30 1 1.2859 -7.3321 2.0971 31 1 -0.2258 -7.5593 1.1780 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705525247.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:50 Heat of formation + Delta-G solvation = -70.439788 kcal Electronic energy + Delta-G solvation = -12114.132682 eV Core-core repulsion = 9906.936232 eV Total energy + Delta-G solvation = -2207.196450 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.33851 -34.49333 -32.34909 -32.05868 -29.52807 -27.45338 -23.51948 -22.78376 -21.91737 -20.21841 -17.23020 -16.70126 -16.28448 -15.37396 -14.82770 -14.58293 -14.46840 -13.98541 -13.41928 -12.58733 -12.47500 -12.08416 -11.86401 -11.72404 -11.36909 -11.32167 -10.88562 -10.86993 -10.52463 -9.92588 -9.82349 -9.61151 -9.32433 -9.13463 -8.38136 -7.55291 -6.03229 -4.05980 1.71912 2.72366 3.32782 3.36881 3.39805 3.69635 4.16491 4.44167 4.62310 4.75212 4.92454 5.00180 5.32658 5.42332 5.45379 5.46504 5.56250 5.59460 5.66764 5.82785 6.07438 6.51038 6.67257 6.74122 6.98222 7.60677 7.72693 7.95245 8.36993 9.00133 9.58325 11.08085 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.082736 B = 0.004760 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.345110 B = 5881.134133 C = 6081.991233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.095 4.095 11 C -0.076 4.076 12 S -0.253 6.253 13 C -0.100 4.100 14 H 0.098 0.902 15 C -0.131 4.131 16 C 0.054 3.946 17 O -0.383 6.383 18 C 0.057 3.943 19 H 0.262 0.738 20 H 0.017 0.983 21 H 0.018 0.982 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.397 -17.200 -0.170 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.134 4.134 11 C -0.224 4.224 12 S -0.023 6.023 13 C -0.230 4.230 14 H 0.117 0.883 15 C -0.169 4.169 16 C -0.023 4.023 17 O -0.302 6.302 18 C -0.022 4.022 19 H 0.071 0.929 20 H 0.036 0.964 21 H 0.036 0.964 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.265 -17.127 -0.002 17.435 hybrid contribution -0.878 1.039 -0.315 1.397 sum 2.387 -16.087 -0.317 16.267 Atomic orbital electron populations 1.69950 1.06087 1.26820 1.50650 1.25017 0.94863 0.99303 0.95190 0.86624 0.79566 0.82941 0.78692 1.20191 1.21258 1.20169 1.21178 0.93087 0.90855 1.50930 0.92589 1.19100 0.93781 0.90821 0.97418 1.21478 0.99191 0.91135 1.01625 1.23686 0.98901 0.95288 1.04511 1.86891 1.17534 1.00131 1.97781 1.24698 0.99852 0.97192 1.01210 0.88342 1.23110 0.99013 0.92083 1.02710 1.23379 0.93794 0.94121 0.91032 1.88400 1.78203 1.17432 1.46178 1.23662 1.00082 0.83595 0.94853 0.92883 0.96436 0.96388 0.92318 0.92354 0.90449 0.90396 0.89148 0.89286 0.89390 0.92022 0.89707 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 10 C -0.10 -1.97 5.16 -26.73 -0.14 -2.10 16 11 C -0.08 -1.29 5.82 37.16 0.22 -1.07 16 12 S -0.25 -3.80 21.02 -107.50 -2.26 -6.06 16 13 C -0.10 -1.19 3.52 -24.79 -0.09 -1.28 16 14 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 15 C -0.13 -1.27 6.63 -24.48 -0.16 -1.43 16 16 C 0.05 0.51 7.78 38.19 0.30 0.80 16 17 O -0.38 -4.86 11.36 -35.23 -0.40 -5.26 16 18 C 0.06 0.70 7.30 37.88 0.28 0.98 16 19 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 20 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 21 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.11 7.77 -51.94 -0.40 0.71 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 273.68 15.07 4.12 4.12 Total: -1.00 -30.02 273.68 -7.98 -38.00 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -5.01 Total: -4.29 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -0.15 Total: -17.07 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.40 Total: -5.26 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -2.26 Total: -6.06 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.02 -7.98 -38.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705525247.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.442 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds