Wall clock time and date at job start Mon Mar 30 2020 02:45:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86797 * 120.00353 * 2 1
4 4 H 1.48500 * 109.47490 * 239.99959 * 3 2 1
5 5 H 1.48503 * 109.46722 * 359.97438 * 3 2 1
6 6 H 1.48495 * 109.47499 * 119.99451 * 3 2 1
7 7 C 1.37883 * 119.99871 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00000 * 180.02562 * 7 2 1
9 9 C 1.50692 * 119.99903 * 0.02562 * 7 2 1
10 10 C 1.53008 * 109.46927 * 179.97438 * 9 7 2
11 11 C 1.52999 * 109.46821 * 179.97438 * 10 9 7
12 12 S 1.81399 * 109.46849 * 180.02562 * 11 10 9
13 13 C 1.81399 * 103.00059 * 179.97438 * 12 11 10
14 14 H 1.09000 * 110.75220 * 57.01980 * 13 12 11
15 15 C 1.55300 * 110.84912 * 180.71208 * 13 12 11
16 16 C 1.54949 * 100.94457 * 152.32612 * 15 13 12
17 17 O 1.43645 * 105.13450 * 323.55307 * 16 15 13
18 18 C 1.43250 * 109.97058 * 24.42938 * 17 16 15
19 19 H 0.97005 * 119.99907 * 0.02562 * 1 2 3
20 20 H 1.09000 * 109.47701 * 59.99764 * 9 7 2
21 21 H 1.09006 * 109.47188 * 299.99070 * 9 7 2
22 22 H 1.08996 * 109.47090 * 60.00021 * 10 9 7
23 23 H 1.08993 * 109.46800 * 299.99425 * 10 9 7
24 24 H 1.08994 * 109.47772 * 59.99662 * 11 10 9
25 25 H 1.09006 * 109.47299 * 299.99347 * 11 10 9
26 26 H 1.09006 * 111.12931 * 270.24274 * 15 13 12
27 27 H 1.08995 * 111.13001 * 34.40442 * 15 13 12
28 28 H 1.08996 * 110.30909 * 204.64176 * 16 15 13
29 29 H 1.09000 * 110.39419 * 82.51266 * 16 15 13
30 30 H 1.08989 * 109.82916 * 238.77561 * 18 17 16
31 31 H 1.08992 * 109.90475 * 117.84425 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1030 1.6963 -1.2125
5 1 1.2841 2.7464 -0.0006
6 1 3.1028 1.6964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4991 0.0005
10 6 2.2453 -3.6621 0.0005
11 6 1.4802 -4.9871 0.0012
12 16 2.6590 -6.3659 0.0019
13 6 1.5807 -7.8246 0.0034
14 1 0.9047 -7.8061 -0.8514
15 6 2.4191 -9.1317 0.0223
16 6 1.4371 -10.1010 0.7273
17 8 0.7643 -9.3018 1.7132
18 6 0.7910 -7.9228 1.3264
19 1 -0.4850 0.8401 -0.0004
20 1 0.6246 -2.5571 -0.8896
21 1 0.6240 -2.5567 0.8904
22 1 2.8719 -3.6044 0.8905
23 1 2.8718 -3.6044 -0.8895
24 1 0.8532 -5.0451 -0.8885
25 1 0.8539 -5.0446 0.8915
26 1 2.6448 -9.4684 -0.9896
27 1 3.3317 -9.0047 0.6046
28 1 1.9851 -10.9117 1.2073
29 1 0.7196 -10.5019 0.0114
30 1 1.2859 -7.3321 2.0971
31 1 -0.2258 -7.5593 1.1780
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000705525247.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:50
Heat of formation + Delta-G solvation = -88.059115 kcal
Electronic energy + Delta-G solvation = -12114.896714 eV
Core-core repulsion = 9906.936232 eV
Total energy + Delta-G solvation = -2207.960482 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 216.093 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-40.21785 -36.38435 -34.06971 -33.24321 -30.42960 -29.32543 -25.41465 -23.64520
-22.97442 -21.90494 -18.59221 -18.11590 -17.50943 -16.67655 -16.36772 -16.17416
-15.67732 -15.06425 -14.44436 -14.35997 -13.97947 -13.65498 -13.14106 -12.89642
-12.75233 -12.69184 -12.55105 -12.23015 -12.12102 -11.67560 -11.39107 -11.13542
-10.94662 -10.56654 -10.54320 -8.75454 -8.21809 -6.33054 0.56375 1.40513
1.43314 1.49992 1.51668 2.40786 2.86176 3.11718 3.30036 3.71893
3.94376 4.00727 4.06238 4.09213 4.24566 4.55188 4.60460 4.70478
4.79220 4.80324 4.83290 4.94600 5.02938 5.11478 5.47346 5.66326
5.80809 5.89667 6.21136 6.82374 7.36285 8.89758
Molecular weight = 216.09amu
Principal moments of inertia in cm(-1)
A = 0.082736 B = 0.004760 C = 0.004603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 338.345110 B = 5881.134133 C = 6081.991233
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C 0.002 3.998
3 Si 0.965 3.035
4 H -0.267 1.267
5 H -0.282 1.282
6 H -0.267 1.267
7 C -0.547 4.547
8 H 0.059 0.941
9 C 0.030 3.970
10 C -0.081 4.081
11 C -0.072 4.072
12 S -0.261 6.261
13 C -0.093 4.093
14 H 0.110 0.890
15 C -0.125 4.125
16 C 0.051 3.949
17 O -0.403 6.403
18 C 0.057 3.943
19 H 0.265 0.735
20 H -0.003 1.003
21 H -0.004 1.004
22 H 0.055 0.945
23 H 0.056 0.944
24 H 0.081 0.919
25 H 0.079 0.921
26 H 0.112 0.888
27 H 0.083 0.917
28 H 0.107 0.893
29 H 0.079 0.921
30 H 0.072 0.928
31 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.265 -18.138 -0.536 18.438
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.196 4.196
3 Si 0.789 3.211
4 H -0.192 1.192
5 H -0.207 1.207
6 H -0.192 1.192
7 C -0.585 4.585
8 H 0.077 0.923
9 C -0.008 4.008
10 C -0.120 4.120
11 C -0.220 4.220
12 S -0.032 6.032
13 C -0.222 4.222
14 H 0.128 0.872
15 C -0.163 4.163
16 C -0.026 4.026
17 O -0.323 6.323
18 C -0.022 4.022
19 H 0.073 0.927
20 H 0.015 0.985
21 H 0.015 0.985
22 H 0.074 0.926
23 H 0.075 0.925
24 H 0.100 0.900
25 H 0.098 0.902
26 H 0.130 0.870
27 H 0.102 0.898
28 H 0.125 0.875
29 H 0.097 0.903
30 H 0.090 0.910
31 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 4.146 -18.073 -0.369 18.546
hybrid contribution -1.164 1.222 -0.195 1.699
sum 2.982 -16.851 -0.564 17.122
Atomic orbital electron populations
1.70077 1.07751 1.27938 1.51430 1.25955 0.95776 1.03300 0.94565
0.85502 0.78304 0.78073 0.79203 1.19174 1.20698 1.19215 1.21637
0.93563 0.92326 1.50974 0.92269 1.18982 0.94176 0.92395 0.95291
1.21176 0.98032 0.91484 1.01328 1.23409 0.98973 0.94783 1.04869
1.86847 1.17696 1.00800 1.97837 1.24805 0.99805 0.96189 1.01441
0.87176 1.23146 0.98491 0.90677 1.04029 1.23616 0.94052 0.93958
0.90942 1.88382 1.78790 1.17540 1.47570 1.23592 1.00190 0.83748
0.94661 0.92671 0.98481 0.98524 0.92605 0.92508 0.90048 0.90195
0.86976 0.89828 0.87525 0.90319 0.90974 0.90735
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16
2 C 0.00 0.12 5.46 84.66 0.46 0.58 16
3 Si 0.96 44.27 29.54 68.60 2.03 46.30 16
4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16
5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16
6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16
7 C -0.55 -31.31 9.11 25.60 0.23 -31.08 16
8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16
9 C 0.03 1.60 4.97 29.85 0.15 1.74 16
10 C -0.08 -3.39 5.16 30.60 0.16 -3.23 16
11 C -0.07 -2.44 5.82 71.98 0.42 -2.02 16
12 S -0.26 -7.53 21.02 -56.49 -1.19 -8.72 16
13 C -0.09 -2.03 3.52 31.85 0.11 -1.92 16
14 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16
15 C -0.13 -2.08 6.63 32.05 0.21 -1.87 16
16 C 0.05 0.81 7.78 72.65 0.57 1.37 16
17 O -0.40 -9.53 11.36 -148.98 -1.69 -11.22 16
18 C 0.06 1.33 7.30 72.45 0.53 1.86 16
19 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16
20 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16
21 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16
22 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16
23 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16
24 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16
25 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16
26 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16
27 H 0.08 1.51 8.03 -2.39 -0.02 1.49 16
28 H 0.11 1.29 8.14 -2.39 -0.02 1.28 16
29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16
30 H 0.07 1.86 7.77 -2.39 -0.02 1.84 16
31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16
Total: -1.00 -64.01 273.68 3.35 -60.66
By element:
Atomic # 1 Polarization: 2.72 SS G_CDS: 1.08 Total: 3.80 kcal
Atomic # 6 Polarization: -37.40 SS G_CDS: 2.84 Total: -34.56 kcal
Atomic # 7 Polarization: -56.55 SS G_CDS: 0.28 Total: -56.27 kcal
Atomic # 8 Polarization: -9.53 SS G_CDS: -1.69 Total: -11.22 kcal
Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal
Atomic # 16 Polarization: -7.53 SS G_CDS: -1.19 Total: -8.72 kcal
Total: -64.01 3.35 -60.66 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000705525247.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.397 kcal
(2) G-P(sol) polarization free energy of solvation -64.008 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.406 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.662 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.059 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds