Wall clock time and date at job start Mon Mar 30 2020 02:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 110.30562 * 2 1 4 4 S 1.83455 * 110.30317 * 237.71196 * 2 1 3 5 5 C 1.83989 * 95.83102 * 260.83578 * 4 2 1 6 6 C 1.55154 * 100.94938 * 324.69386 * 5 4 2 7 7 C 1.52947 * 108.95813 * 41.41755 * 6 5 4 8 8 H 1.08998 * 108.88822 * 90.69451 * 7 6 5 9 9 C 1.52997 * 108.88733 * 209.24918 * 7 6 5 10 10 H 1.09002 * 109.47169 * 174.36935 * 9 7 6 11 11 O 1.42898 * 109.47396 * 54.35996 * 9 7 6 12 12 C 1.50700 * 109.47062 * 294.36197 * 9 7 6 13 13 H 1.08009 * 119.99899 * 0.02562 * 12 9 7 14 14 C 1.37877 * 120.00258 * 180.02562 * 12 9 7 15 15 N 1.31519 * 119.99947 * 180.02562 * 14 12 9 16 16 Si 1.86792 * 120.00008 * 359.97438 * 14 12 9 17 17 H 1.48496 * 109.47250 * 90.00119 * 16 14 12 18 18 H 1.48505 * 109.47430 * 210.00181 * 16 14 12 19 19 H 1.48503 * 109.47095 * 330.00263 * 16 14 12 20 20 H 1.08998 * 109.47147 * 297.82869 * 1 2 3 21 21 H 1.09002 * 109.47006 * 57.82953 * 1 2 3 22 22 H 1.08993 * 109.47139 * 177.82982 * 1 2 3 23 23 H 1.08998 * 109.47267 * 187.11504 * 3 2 1 24 24 H 1.08996 * 109.47276 * 307.12100 * 3 2 1 25 25 H 1.09007 * 109.47191 * 67.12211 * 3 2 1 26 26 H 1.08997 * 111.13181 * 206.76450 * 5 4 2 27 27 H 1.09004 * 111.12886 * 82.62731 * 5 4 2 28 28 H 1.08998 * 109.60443 * 161.34719 * 6 5 4 29 29 H 1.08998 * 109.60428 * 281.67418 * 6 5 4 30 30 H 0.96693 * 114.00077 * 300.00487 * 11 9 7 31 31 H 0.96998 * 119.99722 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4349 0.0000 4 16 2.1665 -0.9191 -1.4545 5 6 2.5048 -2.4863 -0.5520 6 6 2.9639 -1.9398 0.8257 7 6 2.0643 -0.7674 1.2200 8 1 1.2201 -1.1481 1.7948 9 6 2.8644 0.1977 2.0970 10 1 2.2652 1.0851 2.3011 11 8 4.0623 0.5778 1.4170 12 6 3.2177 -0.4795 3.3962 13 1 2.9033 -1.4967 3.5779 14 6 3.9422 0.1994 4.3528 15 7 4.2509 -0.3918 5.4863 16 14 4.4866 1.9584 4.0383 17 1 3.4406 2.8944 4.5229 18 1 5.7577 2.2198 4.7602 19 1 4.6942 2.1593 2.5816 20 1 -0.3633 0.4797 0.9088 21 1 -0.3633 0.5472 -0.8699 22 1 -0.3633 -1.0269 -0.0389 23 1 3.1434 1.4218 -0.1273 24 1 1.6054 1.9909 -0.8194 25 1 1.8123 1.9144 0.9469 26 1 3.3005 -3.0538 -1.0345 27 1 1.6003 -3.0869 -0.4549 28 1 2.8878 -2.7274 1.5753 29 1 3.9967 -1.5980 0.7578 30 1 4.6452 -0.1634 1.2030 31 1 4.7609 0.0858 6.1592 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535647079.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:20 Heat of formation + Delta-G solvation = -53.324138 kcal Electronic energy + Delta-G solvation = -13666.313121 eV Core-core repulsion = 11459.858861 eV Total energy + Delta-G solvation = -2206.454260 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.51394 -34.38512 -32.38638 -32.24607 -28.54046 -26.91566 -25.28017 -22.35565 -21.56598 -18.45803 -17.36344 -15.86931 -15.63538 -14.90096 -14.39661 -13.78851 -13.49305 -13.31941 -12.95220 -12.74551 -12.46903 -12.00980 -11.49627 -11.32650 -10.99603 -10.79838 -10.69738 -10.55284 -10.20071 -10.12235 -9.88680 -9.32250 -8.92278 -8.63380 -8.17458 -7.33258 -6.15469 -4.26299 2.26114 2.73228 3.36191 3.46775 3.71822 4.50500 4.98040 5.13465 5.17954 5.29536 5.31805 5.52094 5.63874 5.72453 5.87264 5.92436 6.02155 6.16329 6.26194 6.33824 6.41088 6.52030 6.59289 6.77409 6.95182 7.32877 7.56625 8.25728 8.79405 8.98127 9.49304 10.95036 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.042093 B = 0.011356 C = 0.010436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.035565 B = 2465.117580 C = 2682.335841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.005 3.995 3 C -0.137 4.137 4 S -0.322 6.322 5 C -0.067 4.067 6 C -0.106 4.106 7 C -0.108 4.108 8 H 0.077 0.923 9 C 0.201 3.799 10 H 0.063 0.937 11 O -0.572 6.572 12 C -0.563 4.563 13 H 0.072 0.928 14 C 0.083 3.917 15 N -0.893 5.893 16 Si 0.867 3.133 17 H -0.288 1.288 18 H -0.297 1.297 19 H -0.214 1.214 20 H 0.063 0.937 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.097 0.903 24 H 0.038 0.962 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.353 0.647 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 -0.643 -10.221 11.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.104 4.104 3 C -0.195 4.195 4 S -0.094 6.094 5 C -0.215 4.215 6 C -0.145 4.145 7 C -0.128 4.128 8 H 0.095 0.905 9 C 0.143 3.857 10 H 0.080 0.920 11 O -0.380 6.380 12 C -0.600 4.600 13 H 0.090 0.910 14 C -0.121 4.121 15 N -0.530 5.530 16 Si 0.693 3.307 17 H -0.215 1.215 18 H -0.223 1.223 19 H -0.137 1.137 20 H 0.082 0.918 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.115 0.885 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.115 0.885 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.202 0.798 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.308 0.259 -11.197 12.000 hybrid contribution 0.235 -0.184 1.308 1.342 sum -4.073 0.075 -9.889 10.695 Atomic orbital electron populations 1.22030 0.93236 1.01918 1.01797 1.23234 0.96828 0.98222 0.92140 1.22191 1.04337 0.92056 1.00908 1.87475 1.85651 1.14654 1.21588 1.24316 1.03595 0.95668 0.97898 1.22264 1.00927 0.97507 0.93791 1.22276 0.99446 0.95973 0.95096 0.90497 1.19858 0.83336 0.93317 0.89141 0.91984 1.86702 1.34217 1.37724 1.79389 1.21556 1.37055 1.01847 0.99564 0.91009 1.25003 0.94232 0.98700 0.94182 1.69958 1.38163 1.37902 1.07002 0.87090 0.77607 0.84086 0.81899 1.21494 1.22339 1.13666 0.91778 0.92500 0.92524 0.88456 0.94301 0.91324 0.88516 0.90086 0.90216 0.90333 0.79794 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.37 37.16 0.31 -1.59 16 2 C 0.01 0.09 1.16 -90.25 -0.10 -0.02 16 3 C -0.14 -2.34 7.30 37.16 0.27 -2.07 16 4 S -0.32 -5.24 22.11 -107.50 -2.38 -7.61 16 5 C -0.07 -0.96 7.52 38.30 0.29 -0.67 16 6 C -0.11 -1.78 5.13 -25.62 -0.13 -1.91 16 7 C -0.11 -1.97 2.16 -90.28 -0.20 -2.16 16 8 H 0.08 1.45 7.60 -51.93 -0.39 1.06 16 9 C 0.20 4.35 1.37 -27.88 -0.04 4.31 16 10 H 0.06 1.40 5.52 -51.93 -0.29 1.11 16 11 O -0.57 -12.06 7.31 -35.23 -0.26 -12.32 16 12 C -0.56 -14.74 8.82 -34.44 -0.30 -15.04 16 13 H 0.07 2.03 7.73 -52.48 -0.41 1.63 16 14 C 0.08 2.31 5.47 -17.82 -0.10 2.22 16 15 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 16 Si 0.87 21.14 26.99 -169.99 -4.59 16.55 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 19 H -0.21 -5.03 5.31 56.52 0.30 -4.73 16 20 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.10 1.81 5.94 -51.93 -0.31 1.51 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.21 6.04 -51.92 -0.31 0.90 16 26 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.08 1.37 7.99 -51.93 -0.41 0.96 16 29 H 0.08 1.35 5.55 -51.93 -0.29 1.06 16 30 H 0.35 6.91 6.65 45.56 0.30 7.21 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 247.36 15.07 3.73 3.73 Total: -1.00 -28.83 247.36 -6.60 -35.43 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -3.88 Total: 7.00 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 0.00 Total: -16.93 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.77 Total: -25.84 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.26 Total: -12.32 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.59 Total: 16.55 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.38 Total: -7.61 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.83 -6.60 -35.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535647079.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.895 kcal (2) G-P(sol) polarization free energy of solvation -28.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds