Wall clock time and date at job start Mon Mar 30 2020 02:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.30226 * 2 1 4 4 S 1.83394 * 110.34137 * 237.71622 * 2 1 3 5 5 C 1.83995 * 95.85104 * 221.37494 * 4 2 1 6 6 C 1.55157 * 100.90626 * 35.35269 * 5 4 2 7 7 C 1.52932 * 108.96041 * 318.55768 * 6 5 4 8 8 H 1.08996 * 108.77666 * 269.38140 * 7 6 5 9 9 C 1.53003 * 108.88495 * 150.89832 * 7 6 5 10 10 H 1.09005 * 109.46803 * 183.13344 * 9 7 6 11 11 O 1.42897 * 109.47300 * 303.12744 * 9 7 6 12 12 C 1.50698 * 109.47534 * 63.13123 * 9 7 6 13 13 H 1.07999 * 119.99522 * 359.97438 * 12 9 7 14 14 C 1.37874 * 120.00497 * 179.97438 * 12 9 7 15 15 N 1.31516 * 119.99430 * 359.97438 * 14 12 9 16 16 Si 1.86795 * 120.00332 * 179.72544 * 14 12 9 17 17 H 1.48496 * 109.47093 * 180.27518 * 16 14 12 18 18 H 1.48497 * 109.47001 * 300.27558 * 16 14 12 19 19 H 1.48505 * 109.47066 * 60.27165 * 16 14 12 20 20 H 1.09001 * 109.47189 * 291.15543 * 1 2 3 21 21 H 1.08996 * 109.47486 * 51.15607 * 1 2 3 22 22 H 1.08998 * 109.47250 * 171.15763 * 1 2 3 23 23 H 1.09009 * 109.47235 * 182.17241 * 3 2 1 24 24 H 1.08993 * 109.47161 * 302.16829 * 3 2 1 25 25 H 1.09003 * 109.47329 * 62.17653 * 3 2 1 26 26 H 1.09001 * 111.12673 * 153.26024 * 5 4 2 27 27 H 1.08996 * 111.13483 * 277.39773 * 5 4 2 28 28 H 1.09005 * 109.59821 * 198.62851 * 6 5 4 29 29 H 1.09000 * 109.60151 * 78.49251 * 6 5 4 30 30 H 0.96705 * 114.00053 * 60.00071 * 11 9 7 31 31 H 0.96992 * 120.00497 * 359.73246 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0608 1.4349 0.0000 4 16 2.1675 -0.9184 -1.4537 5 6 3.5205 -1.7802 -0.5526 6 6 2.8495 -2.0192 0.8258 7 6 2.0644 -0.7674 1.2199 8 1 2.7178 -0.1091 1.7924 9 6 0.8838 -1.1803 2.1014 10 1 0.2855 -0.3016 2.3422 11 8 0.0763 -2.1293 1.4020 12 6 1.3999 -1.8009 3.3740 13 1 2.4635 -1.8921 3.5375 14 6 0.5143 -2.2522 4.3294 15 7 -0.7809 -2.1407 4.1304 16 14 1.1539 -3.0284 5.9035 17 1 0.0081 -3.4335 6.7568 18 1 1.9696 -4.2237 5.5700 19 1 1.9927 -2.0452 6.6349 20 1 -0.3633 0.3709 0.9584 21 1 -0.3634 0.6445 -0.8004 22 1 -0.3633 -1.0154 -0.1580 23 1 3.1501 1.4194 -0.0390 24 1 1.6738 1.9655 -0.8698 25 1 1.7371 1.9422 0.9089 26 1 3.7748 -2.7241 -1.0348 27 1 4.3985 -1.1413 -0.4575 28 1 3.6150 -2.2218 1.5749 29 1 2.1718 -2.8704 0.7599 30 1 0.5448 -2.9385 1.1552 31 1 -1.1131 -1.7374 3.3132 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535647080.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:22 Heat of formation + Delta-G solvation = -65.354220 kcal Electronic energy + Delta-G solvation = -13647.237940 eV Core-core repulsion = 11440.262017 eV Total energy + Delta-G solvation = -2206.975923 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.43840 -34.36443 -32.35187 -32.14090 -28.12831 -26.81933 -24.63920 -22.54751 -21.72515 -18.62735 -17.27143 -15.86313 -15.72021 -14.81089 -13.95044 -13.82156 -13.44090 -13.28435 -12.94580 -12.72843 -12.34271 -11.94731 -11.34832 -11.22073 -10.89425 -10.80089 -10.65199 -10.38786 -10.14130 -10.11657 -9.98667 -9.35499 -9.02526 -8.46559 -7.96045 -7.31893 -6.36786 -4.20734 2.27669 2.75042 3.39487 3.39814 3.59314 4.47994 5.01149 5.15592 5.29550 5.32775 5.33675 5.55489 5.63538 5.83148 5.89749 5.93738 6.04150 6.18495 6.27724 6.39487 6.49554 6.60391 6.60542 6.80076 7.04915 7.47336 7.97395 8.31937 8.83640 9.07239 9.63968 11.02649 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.044496 B = 0.010163 C = 0.009452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.122877 B = 2754.373757 C = 2961.484885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.006 3.994 3 C -0.130 4.130 4 S -0.322 6.322 5 C -0.068 4.068 6 C -0.104 4.104 7 C -0.110 4.110 8 H 0.071 0.929 9 C 0.223 3.777 10 H 0.056 0.944 11 O -0.571 6.571 12 C -0.649 4.649 13 H 0.048 0.952 14 C 0.035 3.965 15 N -0.892 5.892 16 Si 1.063 2.937 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.289 1.289 20 H 0.070 0.930 21 H 0.035 0.965 22 H 0.097 0.903 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.350 0.650 31 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.522 2.555 -6.634 9.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 C -0.189 4.189 4 S -0.094 6.094 5 C -0.216 4.216 6 C -0.142 4.142 7 C -0.131 4.131 8 H 0.090 0.910 9 C 0.165 3.835 10 H 0.074 0.926 11 O -0.378 6.378 12 C -0.687 4.687 13 H 0.067 0.933 14 C -0.174 4.174 15 N -0.527 5.527 16 Si 0.892 3.108 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.215 1.215 20 H 0.088 0.912 21 H 0.054 0.946 22 H 0.115 0.885 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.198 0.802 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.238 2.300 -6.324 8.528 hybrid contribution 1.534 0.405 -0.312 1.617 sum 6.772 2.704 -6.636 9.860 Atomic orbital electron populations 1.22173 0.91324 1.04640 1.01062 1.23224 0.99236 0.95824 0.92011 1.22024 1.00661 0.94457 1.01759 1.87458 1.40759 1.59381 1.21769 1.24320 0.97485 1.01776 0.98029 1.22238 0.99057 0.99372 0.93574 1.22341 0.99924 0.95563 0.95252 0.91046 1.19579 0.86436 0.89429 0.88042 0.92627 1.86521 1.42977 1.30499 1.77792 1.22464 0.94729 1.47017 1.04446 0.93346 1.25725 0.94423 0.95200 1.02038 1.70641 1.13259 1.39142 1.29613 0.83643 0.75341 0.76255 0.75587 1.20783 1.21489 1.21546 0.91169 0.94568 0.88495 0.92652 0.92489 0.91871 0.88569 0.90174 0.90609 0.90451 0.80230 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 7.25 37.16 0.27 -2.22 16 2 C 0.01 0.11 1.15 -90.25 -0.10 0.01 16 3 C -0.13 -2.00 8.37 37.16 0.31 -1.69 16 4 S -0.32 -5.50 22.10 -107.50 -2.38 -7.88 16 5 C -0.07 -1.02 7.52 38.30 0.29 -0.73 16 6 C -0.10 -1.82 5.03 -25.62 -0.13 -1.94 16 7 C -0.11 -2.13 2.17 -90.28 -0.20 -2.33 16 8 H 0.07 1.41 7.61 -51.93 -0.40 1.01 16 9 C 0.22 5.18 1.47 -27.88 -0.04 5.14 16 10 H 0.06 1.42 6.11 -51.93 -0.32 1.10 16 11 O -0.57 -13.35 9.02 -35.23 -0.32 -13.67 16 12 C -0.65 -17.01 8.21 -34.44 -0.28 -17.30 16 13 H 0.05 1.26 7.32 -52.49 -0.38 0.87 16 14 C 0.04 0.97 5.40 -17.82 -0.10 0.87 16 15 N -0.89 -26.37 13.53 55.43 0.75 -25.62 16 16 Si 1.06 24.38 29.90 -169.99 -5.08 19.29 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 20 H 0.07 1.38 6.00 -51.93 -0.31 1.07 16 21 H 0.04 0.61 8.13 -51.93 -0.42 0.18 16 22 H 0.10 1.97 5.97 -51.93 -0.31 1.66 16 23 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.08 1.32 7.86 -51.93 -0.41 0.91 16 29 H 0.08 1.42 5.68 -51.93 -0.29 1.13 16 30 H 0.35 7.70 6.75 45.56 0.31 8.01 16 31 H 0.28 8.49 6.48 -40.82 -0.26 8.22 16 LS Contribution 251.07 15.07 3.78 3.78 Total: -1.00 -28.39 251.07 -6.93 -35.33 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -3.71 Total: 8.96 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 0.02 Total: -20.19 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.75 Total: -25.62 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.32 Total: -13.67 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.08 Total: 19.29 kcal Atomic # 16 Polarization: -5.50 SS G_CDS: -2.38 Total: -7.88 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.39 -6.93 -35.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535647080.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.029 kcal (2) G-P(sol) polarization free energy of solvation -28.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds