Wall clock time and date at job start Mon Mar 30 2020 02:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.30226 * 2 1 4 4 S 1.83394 * 110.34137 * 237.71622 * 2 1 3 5 5 C 1.83995 * 95.85104 * 221.37494 * 4 2 1 6 6 C 1.55157 * 100.90626 * 35.35269 * 5 4 2 7 7 C 1.52932 * 108.96041 * 318.55768 * 6 5 4 8 8 H 1.08996 * 108.77666 * 269.38140 * 7 6 5 9 9 C 1.53003 * 108.88495 * 150.89832 * 7 6 5 10 10 H 1.09005 * 109.46803 * 183.13344 * 9 7 6 11 11 O 1.42897 * 109.47300 * 303.12744 * 9 7 6 12 12 C 1.50698 * 109.47534 * 63.13123 * 9 7 6 13 13 H 1.07999 * 119.99522 * 359.97438 * 12 9 7 14 14 C 1.37874 * 120.00497 * 179.97438 * 12 9 7 15 15 N 1.31516 * 119.99430 * 359.97438 * 14 12 9 16 16 Si 1.86795 * 120.00332 * 179.72544 * 14 12 9 17 17 H 1.48496 * 109.47093 * 180.27518 * 16 14 12 18 18 H 1.48497 * 109.47001 * 300.27558 * 16 14 12 19 19 H 1.48505 * 109.47066 * 60.27165 * 16 14 12 20 20 H 1.09001 * 109.47189 * 291.15543 * 1 2 3 21 21 H 1.08996 * 109.47486 * 51.15607 * 1 2 3 22 22 H 1.08998 * 109.47250 * 171.15763 * 1 2 3 23 23 H 1.09009 * 109.47235 * 182.17241 * 3 2 1 24 24 H 1.08993 * 109.47161 * 302.16829 * 3 2 1 25 25 H 1.09003 * 109.47329 * 62.17653 * 3 2 1 26 26 H 1.09001 * 111.12673 * 153.26024 * 5 4 2 27 27 H 1.08996 * 111.13483 * 277.39773 * 5 4 2 28 28 H 1.09005 * 109.59821 * 198.62851 * 6 5 4 29 29 H 1.09000 * 109.60151 * 78.49251 * 6 5 4 30 30 H 0.96705 * 114.00053 * 60.00071 * 11 9 7 31 31 H 0.96992 * 120.00497 * 359.73246 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0608 1.4349 0.0000 4 16 2.1675 -0.9184 -1.4537 5 6 3.5205 -1.7802 -0.5526 6 6 2.8495 -2.0192 0.8258 7 6 2.0644 -0.7674 1.2199 8 1 2.7178 -0.1091 1.7924 9 6 0.8838 -1.1803 2.1014 10 1 0.2855 -0.3016 2.3422 11 8 0.0763 -2.1293 1.4020 12 6 1.3999 -1.8009 3.3740 13 1 2.4635 -1.8921 3.5375 14 6 0.5143 -2.2522 4.3294 15 7 -0.7809 -2.1407 4.1304 16 14 1.1539 -3.0284 5.9035 17 1 0.0081 -3.4335 6.7568 18 1 1.9696 -4.2237 5.5700 19 1 1.9927 -2.0452 6.6349 20 1 -0.3633 0.3709 0.9584 21 1 -0.3634 0.6445 -0.8004 22 1 -0.3633 -1.0154 -0.1580 23 1 3.1501 1.4194 -0.0390 24 1 1.6738 1.9655 -0.8698 25 1 1.7371 1.9422 0.9089 26 1 3.7748 -2.7241 -1.0348 27 1 4.3985 -1.1413 -0.4575 28 1 3.6150 -2.2218 1.5749 29 1 2.1718 -2.8704 0.7599 30 1 0.5448 -2.9385 1.1552 31 1 -1.1131 -1.7374 3.3132 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535647080.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:21 Heat of formation + Delta-G solvation = -82.695702 kcal Electronic energy + Delta-G solvation = -13647.989924 eV Core-core repulsion = 11440.262017 eV Total energy + Delta-G solvation = -2207.727907 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.09034 -36.09673 -34.21131 -33.71355 -29.82123 -28.25011 -26.44355 -24.21885 -23.24777 -20.22092 -19.23671 -17.46516 -17.21093 -16.35146 -15.72453 -15.61894 -15.00124 -14.82632 -14.27100 -14.16541 -13.92414 -13.70761 -12.91797 -12.76789 -12.57687 -12.42265 -12.04648 -11.95463 -11.83428 -11.76454 -11.55150 -11.01515 -10.67035 -10.51209 -9.87549 -8.66404 -8.52918 -6.38351 0.94708 1.42411 1.54254 1.60598 1.79458 2.58389 3.22301 3.58907 3.74351 3.92752 3.98533 4.04732 4.21510 4.33658 4.57652 4.61717 4.70638 4.83903 4.88671 4.89215 5.02476 5.09261 5.17335 5.21949 5.46504 5.65105 5.94389 6.21060 6.63913 7.20793 7.55959 8.83548 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.044496 B = 0.010163 C = 0.009452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.122877 B = 2754.373757 C = 2961.484885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.006 3.994 3 C -0.126 4.126 4 S -0.334 6.334 5 C -0.052 4.052 6 C -0.103 4.103 7 C -0.103 4.103 8 H 0.068 0.932 9 C 0.226 3.774 10 H 0.027 0.973 11 O -0.577 6.577 12 C -0.650 4.650 13 H 0.052 0.948 14 C -0.017 4.017 15 N -0.925 5.925 16 Si 1.109 2.891 17 H -0.291 1.291 18 H -0.270 1.270 19 H -0.272 1.272 20 H 0.049 0.951 21 H 0.052 0.948 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.119 0.881 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.355 0.645 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.519 2.448 -7.152 11.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.104 4.104 3 C -0.185 4.185 4 S -0.106 6.106 5 C -0.200 4.200 6 C -0.142 4.142 7 C -0.124 4.124 8 H 0.086 0.914 9 C 0.168 3.832 10 H 0.045 0.955 11 O -0.384 6.384 12 C -0.688 4.688 13 H 0.070 0.930 14 C -0.219 4.219 15 N -0.561 5.561 16 Si 0.932 3.068 17 H -0.216 1.216 18 H -0.195 1.195 19 H -0.198 1.198 20 H 0.068 0.932 21 H 0.071 0.929 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.137 0.863 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.203 0.797 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.257 2.199 -6.860 10.226 hybrid contribution 0.913 0.442 -0.196 1.032 sum 8.170 2.641 -7.056 11.113 Atomic orbital electron populations 1.22033 0.92478 1.03517 1.00514 1.23154 0.98372 0.97174 0.91672 1.21992 1.01402 0.92781 1.02291 1.87518 1.41933 1.59778 1.21378 1.24373 0.96898 1.03031 0.95715 1.22170 0.98833 0.97758 0.95392 1.22207 0.98185 0.96587 0.95380 0.91378 1.19388 0.87301 0.88223 0.88266 0.95532 1.86509 1.43354 1.30879 1.77689 1.22855 0.94806 1.45770 1.05350 0.93007 1.27101 0.94113 0.95442 1.05238 1.70775 1.14553 1.41494 1.29306 0.83041 0.74985 0.76489 0.72305 1.21649 1.19524 1.19783 0.93181 0.92923 0.90521 0.91404 0.91281 0.92007 0.86307 0.88080 0.90288 0.91653 0.79669 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 7.25 71.98 0.52 -4.22 16 2 C 0.01 0.19 1.15 -10.56 -0.01 0.18 16 3 C -0.13 -3.62 8.37 71.98 0.60 -3.02 16 4 S -0.33 -10.65 22.10 -56.49 -1.25 -11.90 16 5 C -0.05 -1.40 7.52 72.72 0.55 -0.85 16 6 C -0.10 -3.39 5.03 31.31 0.16 -3.23 16 7 C -0.10 -3.89 2.17 -10.58 -0.02 -3.91 16 8 H 0.07 2.60 7.61 -2.39 -0.02 2.58 16 9 C 0.23 10.66 1.47 29.85 0.04 10.70 16 10 H 0.03 1.42 6.11 -2.38 -0.01 1.41 16 11 O -0.58 -27.56 9.02 -148.98 -1.34 -28.91 16 12 C -0.65 -34.04 8.21 25.60 0.21 -33.83 16 13 H 0.05 2.63 7.32 -2.91 -0.02 2.61 16 14 C -0.02 -0.93 5.40 84.65 0.46 -0.47 16 15 N -0.92 -55.86 13.53 21.45 0.29 -55.57 16 16 Si 1.11 48.59 29.90 68.60 2.05 50.64 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 20 H 0.05 2.04 6.00 -2.39 -0.01 2.03 16 21 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 22 H 0.08 3.16 5.97 -2.39 -0.01 3.14 16 23 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 24 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.08 2.56 7.86 -2.38 -0.02 2.54 16 29 H 0.06 2.32 5.68 -2.39 -0.01 2.30 16 30 H 0.36 15.82 6.75 -74.05 -0.50 15.32 16 31 H 0.27 16.65 6.48 -92.71 -0.60 16.05 16 Total: -1.00 -60.42 251.07 3.04 -57.38 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.79 Total: 27.01 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 2.50 Total: -38.65 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.29 Total: -55.57 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -1.34 Total: -28.91 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.05 Total: 50.64 kcal Atomic # 16 Polarization: -10.65 SS G_CDS: -1.25 Total: -11.90 kcal Total: -60.42 3.04 -57.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535647080.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.320 kcal (2) G-P(sol) polarization free energy of solvation -60.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds