Wall clock time and date at job start Mon Mar 30 2020 02:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30847 * 1 3 3 Si 1.86804 * 119.99715 * 2 1 4 4 H 1.48499 * 109.47393 * 275.40522 * 3 2 1 5 5 H 1.48505 * 109.47080 * 35.40837 * 3 2 1 6 6 H 1.48503 * 109.47068 * 155.40180 * 3 2 1 7 7 C 1.39940 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99381 * 341.68299 * 7 2 1 9 9 C 1.41215 * 120.00053 * 161.69133 * 7 2 1 10 10 C 1.41256 * 120.59290 * 150.69820 * 9 7 2 11 11 C 1.36699 * 118.38107 * 180.28149 * 10 9 7 12 12 C 1.39451 * 119.50335 * 359.72845 * 11 10 9 13 13 N 1.39378 * 119.40591 * 179.97438 * 12 11 10 14 14 C 1.34921 * 126.85309 * 179.72668 * 13 12 11 15 15 N 1.30798 * 108.00511 * 179.87412 * 14 13 12 16 16 C 1.33314 * 109.85216 * 0.40761 * 15 14 13 17 17 N 1.30720 * 109.03462 * 359.74867 * 16 15 14 18 18 N 1.32606 * 121.18560 * 0.02562 * 12 11 10 19 19 C 1.31446 * 121.76401 * 359.97438 * 18 12 11 20 20 H 0.96994 * 119.99890 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.80894 * 359.97438 * 10 9 7 22 22 H 1.07995 * 120.25111 * 179.70651 * 11 10 9 23 23 H 1.07999 * 125.99834 * 0.02562 * 14 13 12 24 24 H 1.08007 * 125.48049 * 179.74694 * 16 15 14 25 25 H 1.07998 * 119.82647 * 180.02562 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.3757 2.1125 -1.3938 5 1 1.5016 2.6170 0.8112 6 1 3.5924 1.4100 0.5828 7 6 2.0082 -1.2119 -0.0005 8 1 1.5092 -2.1236 0.2930 9 6 3.3668 -1.2426 -0.3847 10 6 4.2436 -2.2120 0.1508 11 6 5.5510 -2.1967 -0.2481 12 6 5.9774 -1.2385 -1.1672 13 7 7.3110 -1.2244 -1.5721 14 6 7.8809 -0.3740 -2.4510 15 7 9.1458 -0.6894 -2.5565 16 6 9.4190 -1.7334 -1.7738 17 7 8.3283 -2.0965 -1.1514 18 7 5.1371 -0.3399 -1.6620 19 6 3.8704 -0.3105 -1.3121 20 1 -0.4850 0.8400 0.0004 21 1 3.8907 -2.9443 0.8618 22 1 6.2485 -2.9210 0.1458 23 1 7.3809 0.4280 -2.9736 24 1 10.3859 -2.2035 -1.6705 25 1 3.2134 0.4350 -1.7351 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535763936.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:01 Heat of formation + Delta-G solvation = 120.854024 kcal Electronic energy + Delta-G solvation = -13399.642735 eV Core-core repulsion = 10994.049864 eV Total energy + Delta-G solvation = -2405.592872 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.071 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.68780 -38.92676 -34.61195 -33.06159 -31.75962 -30.67461 -29.98411 -25.77830 -23.19787 -22.78115 -20.99274 -20.74619 -17.99302 -17.81268 -16.07274 -15.33001 -15.07971 -14.69370 -13.95528 -13.74405 -13.45289 -13.01892 -13.00017 -12.23742 -11.70169 -11.48643 -11.23852 -10.90530 -10.43149 -10.12314 -9.71846 -9.56089 -9.40586 -8.96590 -8.65191 -7.77317 -7.40759 -4.88816 1.48188 2.27539 2.55991 2.75952 2.89306 2.99035 3.06935 3.31954 3.64244 4.18095 4.70556 5.03508 5.07583 5.25433 5.70620 5.93905 6.05361 6.14278 6.48130 6.58903 6.64662 6.80679 6.92567 7.17308 7.37223 7.68319 7.81389 8.07498 8.22276 8.41191 8.93914 9.58004 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.058439 B = 0.008161 C = 0.007420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.016499 B = 3430.067275 C = 3772.655838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.080 3.920 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.245 1.245 7 C -0.405 4.405 8 H 0.101 0.899 9 C 0.040 3.960 10 C -0.168 4.168 11 C -0.093 4.093 12 C 0.170 3.830 13 N -0.278 5.278 14 C 0.255 3.745 15 N -0.559 5.559 16 C 0.181 3.819 17 N -0.323 5.323 18 N -0.455 5.455 19 C -0.005 4.005 20 H 0.295 0.705 21 H 0.122 0.878 22 H 0.121 0.879 23 H 0.216 0.784 24 H 0.214 0.786 25 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 0.674 -0.658 5.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.168 1.168 7 C -0.433 4.433 8 H 0.119 0.881 9 C 0.034 3.966 10 C -0.194 4.194 11 C -0.115 4.115 12 C -0.054 4.054 13 N -0.060 5.060 14 C -0.040 4.040 15 N -0.288 5.288 16 C -0.121 4.121 17 N -0.153 5.153 18 N -0.166 5.166 19 C -0.171 4.171 20 H 0.106 0.894 21 H 0.140 0.860 22 H 0.139 0.861 23 H 0.233 0.767 24 H 0.230 0.770 25 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.983 0.920 -0.911 6.122 hybrid contribution -0.334 0.262 0.511 0.664 sum 5.650 1.182 -0.400 5.786 Atomic orbital electron populations 1.69662 1.08236 1.31447 1.30343 1.26332 0.94929 1.02273 0.90862 0.86313 0.81196 0.79146 0.79861 1.18461 1.20724 1.16780 1.19617 0.92482 0.96561 1.34611 0.88067 1.18668 0.94168 0.92520 0.91254 1.21048 0.91901 1.03229 1.03174 1.20843 0.96797 0.97378 0.96490 1.16929 0.81206 1.01510 1.05774 1.47094 1.07125 1.21919 1.29898 1.26005 0.89098 0.96292 0.92611 1.70547 1.13926 1.17441 1.26881 1.25908 0.98271 0.94153 0.93814 1.77999 0.96268 1.15887 1.25153 1.66098 1.04636 1.21178 1.24688 1.22261 0.89649 1.03756 1.01421 0.89417 0.86007 0.86138 0.76722 0.76974 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.06 13.93 55.55 0.77 -17.29 15 2 C 0.08 1.83 5.41 -17.33 -0.09 1.73 15 3 Si 0.91 18.43 24.52 -169.99 -4.17 14.26 15 4 H -0.26 -5.06 6.71 56.52 0.38 -4.69 15 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 15 6 H -0.24 -5.27 6.86 56.52 0.39 -4.88 15 7 C -0.41 -9.60 9.59 -37.81 -0.36 -9.96 15 8 H 0.10 2.47 8.06 -52.48 -0.42 2.05 15 9 C 0.04 0.91 5.12 -106.65 -0.55 0.37 15 10 C -0.17 -3.59 9.88 -38.99 -0.39 -3.98 15 11 C -0.09 -1.97 9.64 -39.69 -0.38 -2.35 15 12 C 0.17 3.76 7.56 -154.36 -1.17 2.59 15 13 N -0.28 -5.71 3.80 -13.24 -0.05 -5.76 15 14 C 0.25 4.69 12.24 -90.24 -1.10 3.59 15 15 N -0.56 -9.97 11.19 -15.70 -0.18 -10.14 15 16 C 0.18 2.98 13.03 -91.74 -1.20 1.78 15 17 N -0.32 -6.19 11.98 29.31 0.35 -5.84 15 18 N -0.46 -10.28 9.85 -11.63 -0.11 -10.39 15 19 C -0.01 -0.12 8.37 -16.75 -0.14 -0.26 15 20 H 0.29 6.14 8.30 -40.82 -0.34 5.80 15 21 H 0.12 2.33 8.06 -52.49 -0.42 1.91 15 22 H 0.12 2.37 7.70 -52.49 -0.40 1.96 15 23 H 0.22 3.42 8.05 -52.49 -0.42 3.00 15 24 H 0.21 2.47 8.06 -52.48 -0.42 2.04 15 25 H 0.14 3.12 4.71 -52.49 -0.25 2.87 15 LS Contribution 229.71 15.07 3.46 3.46 Total: -1.00 -26.37 229.71 -6.81 -33.19 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -1.51 Total: 5.02 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -5.38 Total: -6.50 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.78 Total: -49.43 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -4.17 Total: 14.26 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -26.37 -6.81 -33.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535763936.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.039 kcal (2) G-P(sol) polarization free energy of solvation -26.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds