Wall clock time and date at job start Mon Mar 30 2020 02:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30847 * 1 3 3 Si 1.86804 * 119.99715 * 2 1 4 4 H 1.48499 * 109.47393 * 275.40522 * 3 2 1 5 5 H 1.48505 * 109.47080 * 35.40837 * 3 2 1 6 6 H 1.48503 * 109.47068 * 155.40180 * 3 2 1 7 7 C 1.39940 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99381 * 341.68299 * 7 2 1 9 9 C 1.41215 * 120.00053 * 161.69133 * 7 2 1 10 10 C 1.41256 * 120.59290 * 150.69820 * 9 7 2 11 11 C 1.36699 * 118.38107 * 180.28149 * 10 9 7 12 12 C 1.39451 * 119.50335 * 359.72845 * 11 10 9 13 13 N 1.39378 * 119.40591 * 179.97438 * 12 11 10 14 14 C 1.34921 * 126.85309 * 179.72668 * 13 12 11 15 15 N 1.30798 * 108.00511 * 179.87412 * 14 13 12 16 16 C 1.33314 * 109.85216 * 0.40761 * 15 14 13 17 17 N 1.30720 * 109.03462 * 359.74867 * 16 15 14 18 18 N 1.32606 * 121.18560 * 0.02562 * 12 11 10 19 19 C 1.31446 * 121.76401 * 359.97438 * 18 12 11 20 20 H 0.96994 * 119.99890 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.80894 * 359.97438 * 10 9 7 22 22 H 1.07995 * 120.25111 * 179.70651 * 11 10 9 23 23 H 1.07999 * 125.99834 * 0.02562 * 14 13 12 24 24 H 1.08007 * 125.48049 * 179.74694 * 16 15 14 25 25 H 1.07998 * 119.82647 * 180.02562 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.3757 2.1125 -1.3938 5 1 1.5016 2.6170 0.8112 6 1 3.5924 1.4100 0.5828 7 6 2.0082 -1.2119 -0.0005 8 1 1.5092 -2.1236 0.2930 9 6 3.3668 -1.2426 -0.3847 10 6 4.2436 -2.2120 0.1508 11 6 5.5510 -2.1967 -0.2481 12 6 5.9774 -1.2385 -1.1672 13 7 7.3110 -1.2244 -1.5721 14 6 7.8809 -0.3740 -2.4510 15 7 9.1458 -0.6894 -2.5565 16 6 9.4190 -1.7334 -1.7738 17 7 8.3283 -2.0965 -1.1514 18 7 5.1371 -0.3399 -1.6620 19 6 3.8704 -0.3105 -1.3121 20 1 -0.4850 0.8400 0.0004 21 1 3.8907 -2.9443 0.8618 22 1 6.2485 -2.9210 0.1458 23 1 7.3809 0.4280 -2.9736 24 1 10.3859 -2.2035 -1.6705 25 1 3.2134 0.4350 -1.7351 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535763936.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:01 Heat of formation + Delta-G solvation = 107.337679 kcal Electronic energy + Delta-G solvation = -13400.228848 eV Core-core repulsion = 10994.049864 eV Total energy + Delta-G solvation = -2406.178984 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.071 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.13493 -40.63127 -36.29642 -34.66796 -33.44116 -32.13500 -31.64309 -27.44147 -24.85993 -24.36568 -22.47888 -22.31423 -19.72905 -19.38329 -17.74745 -16.83512 -16.66141 -16.24932 -15.60176 -15.26096 -14.92449 -14.67469 -14.65964 -13.90453 -13.25851 -13.10509 -12.90672 -12.60852 -12.04531 -11.72992 -11.25866 -11.09911 -10.84419 -10.67601 -10.37585 -9.46859 -9.11876 -6.66820 -0.09828 0.54870 0.98426 1.23810 1.26832 1.39412 1.44239 1.95764 2.00911 2.46185 3.28892 3.43065 3.56026 3.79090 4.17007 4.31820 4.39880 4.54102 4.86037 4.90138 5.13061 5.20070 5.49275 5.54242 5.70734 5.97728 6.07928 6.35341 6.47826 6.91166 7.27799 7.92916 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.058439 B = 0.008161 C = 0.007420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.016499 B = 3430.067275 C = 3772.655838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.057 3.943 3 Si 0.955 3.045 4 H -0.247 1.247 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.435 4.435 8 H 0.081 0.919 9 C 0.029 3.971 10 C -0.166 4.166 11 C -0.099 4.099 12 C 0.177 3.823 13 N -0.303 5.303 14 C 0.259 3.741 15 N -0.564 5.564 16 C 0.196 3.804 17 N -0.346 5.346 18 N -0.463 5.463 19 C -0.017 4.017 20 H 0.305 0.695 21 H 0.140 0.860 22 H 0.137 0.863 23 H 0.234 0.766 24 H 0.260 0.740 25 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.715 1.047 -1.022 7.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.164 4.164 3 Si 0.777 3.223 4 H -0.172 1.172 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.463 4.463 8 H 0.099 0.901 9 C 0.024 3.976 10 C -0.191 4.191 11 C -0.121 4.121 12 C -0.049 4.049 13 N -0.086 5.086 14 C -0.036 4.036 15 N -0.293 5.293 16 C -0.106 4.106 17 N -0.176 5.176 18 N -0.174 5.174 19 C -0.181 4.181 20 H 0.116 0.884 21 H 0.158 0.842 22 H 0.154 0.846 23 H 0.250 0.750 24 H 0.276 0.724 25 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.894 1.294 -1.280 8.101 hybrid contribution -0.647 0.054 0.564 0.860 sum 7.247 1.348 -0.716 7.406 Atomic orbital electron populations 1.69659 1.09009 1.32690 1.31674 1.26795 0.95334 1.03958 0.90310 0.85647 0.79180 0.76978 0.80451 1.17195 1.19118 1.18936 1.19559 0.93159 0.96504 1.37035 0.90071 1.18783 0.94149 0.93200 0.91464 1.21327 0.91906 1.02951 1.02940 1.21031 0.96910 0.97675 0.96464 1.17242 0.81991 1.00774 1.04855 1.47149 1.06816 1.23296 1.31314 1.26544 0.89411 0.95979 0.91651 1.70655 1.13479 1.17945 1.27172 1.26883 0.99178 0.92902 0.91626 1.78001 0.96745 1.16484 1.26321 1.66147 1.04598 1.21646 1.25016 1.22373 0.90008 1.04123 1.01581 0.88354 0.84228 0.84567 0.74967 0.72443 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.02 13.93 21.83 0.30 -37.72 15 2 C 0.06 2.63 5.41 85.25 0.46 3.09 15 3 Si 0.95 37.50 24.52 68.60 1.68 39.18 15 4 H -0.25 -9.14 6.71 99.48 0.67 -8.48 15 5 H -0.27 -9.68 7.11 99.48 0.71 -8.97 15 6 H -0.26 -11.23 6.86 99.48 0.68 -10.54 15 7 C -0.43 -21.04 9.59 23.41 0.22 -20.81 15 8 H 0.08 4.13 8.06 -2.91 -0.02 4.10 15 9 C 0.03 1.36 5.12 -21.18 -0.11 1.25 15 10 C -0.17 -6.98 9.88 22.65 0.22 -6.76 15 11 C -0.10 -4.05 9.64 22.20 0.21 -3.84 15 12 C 0.18 7.57 7.56 132.95 1.01 8.57 15 13 N -0.30 -11.77 3.80 -195.81 -0.74 -12.52 15 14 C 0.26 8.89 12.24 180.21 2.21 11.10 15 15 N -0.56 -18.30 11.19 -203.59 -2.28 -20.58 15 16 C 0.20 5.73 13.03 180.74 2.35 8.09 15 17 N -0.35 -12.34 11.98 -61.19 -0.73 -13.07 15 18 N -0.46 -20.36 9.85 -190.70 -1.88 -22.24 15 19 C -0.02 -0.78 8.37 85.38 0.71 -0.06 15 20 H 0.31 12.71 8.30 -92.71 -0.77 11.94 15 21 H 0.14 5.25 8.06 -2.91 -0.02 5.23 15 22 H 0.14 5.10 7.70 -2.91 -0.02 5.08 15 23 H 0.23 6.85 8.05 -2.91 -0.02 6.82 15 24 H 0.26 4.71 8.06 -2.91 -0.02 4.69 15 25 H 0.15 6.37 4.71 -2.91 -0.01 6.35 15 Total: -1.00 -54.89 229.71 4.81 -50.09 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 1.16 Total: 16.23 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 7.30 Total: 0.63 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -5.33 Total: -106.12 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 1.68 Total: 39.18 kcal Total: -54.89 4.81 -50.09 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535763936.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.424 kcal (2) G-P(sol) polarization free energy of solvation -54.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds