Wall clock time and date at job start Mon Mar 30 2020 02:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34953 * 126.03659 * 2 1 4 4 C 1.35317 * 107.74177 * 180.14555 * 3 2 1 5 5 C 1.50700 * 126.03483 * 179.87841 * 4 3 2 6 6 C 1.50702 * 109.46869 * 264.68718 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.39866 * 107.92259 * 359.60965 * 4 3 2 15 15 C 1.50704 * 125.89909 * 180.25889 * 14 4 3 16 16 F 1.39899 * 109.46918 * 300.00499 * 15 14 4 17 17 F 1.39898 * 109.46993 * 60.00267 * 15 14 4 18 18 N 1.30837 * 108.20197 * 0.24586 * 14 4 3 19 19 H 1.08996 * 109.47275 * 270.26106 * 1 2 3 20 20 H 1.09008 * 109.47099 * 30.25910 * 1 2 3 21 21 H 1.08999 * 109.47158 * 150.25348 * 1 2 3 22 22 H 1.07999 * 126.12711 * 0.02562 * 3 2 1 23 23 H 1.09004 * 109.47210 * 144.69011 * 5 4 3 24 24 H 1.08994 * 109.47551 * 24.68664 * 5 4 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 26 26 H 1.08990 * 109.47211 * 180.02562 * 15 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7679 1.5453 -0.0071 6 6 5.2488 1.7306 -1.4232 7 1 4.7206 1.2595 -2.2390 8 6 6.3597 2.5066 -1.6781 9 7 7.0028 3.0806 -0.6848 10 14 6.9512 2.7425 -3.4341 11 1 5.8766 3.3796 -4.2371 12 1 8.1548 3.6124 -3.4384 13 1 7.2928 1.4228 -4.0230 14 6 3.5346 -0.7321 0.0037 15 6 4.7496 -1.6236 0.0086 16 9 5.5162 -1.3734 -1.1347 17 9 5.5153 -1.3621 1.1498 18 7 2.2891 -1.1327 0.0056 19 1 -0.3633 0.0047 1.0276 20 1 -0.3634 0.8877 -0.5179 21 1 -0.3633 -0.8922 -0.5099 22 1 1.9281 2.1194 0.0004 23 1 5.5538 1.0762 0.5851 24 1 4.5199 2.5159 0.4223 25 1 7.7845 3.6263 -0.8641 26 1 4.4347 -2.6670 0.0132 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536142519.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:22 Heat of formation + Delta-G solvation = -27.307941 kcal Electronic energy + Delta-G solvation = -14512.932852 eV Core-core repulsion = 11650.226009 eV Total energy + Delta-G solvation = -2862.706843 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.23245 -46.23543 -40.68170 -33.80139 -32.73800 -30.67663 -28.36590 -26.78375 -24.54013 -22.53686 -20.39447 -19.36609 -16.58085 -16.55296 -16.48516 -16.10765 -15.34188 -14.98271 -14.39559 -13.14148 -13.05729 -12.94518 -12.60142 -12.54976 -12.23296 -12.01747 -11.79038 -11.32200 -10.89322 -10.71767 -10.54141 -9.98032 -9.59166 -9.34437 -9.01217 -8.27864 -7.60486 -5.89785 -3.91445 2.19544 2.75513 3.28207 3.40958 3.44569 3.50134 4.29863 4.56846 4.62731 4.96716 5.19352 5.22533 5.41962 5.44596 5.51331 5.69829 6.11715 6.36835 6.56910 7.11990 7.47029 7.66727 7.77462 8.05943 8.08992 8.47828 9.11633 9.70935 11.20280 Molecular weight = 216.08amu Principal moments of inertia in cm(-1) A = 0.029242 B = 0.010850 C = 0.009216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.308818 B = 2580.040855 C = 3037.534581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.377 5.377 3 C 0.026 3.974 4 C -0.145 4.145 5 C 0.080 3.920 6 C -0.500 4.500 7 H 0.053 0.947 8 C 0.058 3.942 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.276 1.276 14 C -0.009 4.009 15 C 0.365 3.635 16 F -0.178 7.178 17 F -0.193 7.193 18 N -0.283 5.283 19 H 0.069 0.931 20 H 0.085 0.915 21 H 0.083 0.917 22 H 0.174 0.826 23 H 0.033 0.967 24 H 0.026 0.974 25 H 0.260 0.740 26 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.277 -6.374 1.806 12.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.162 5.162 3 C -0.116 4.116 4 C -0.155 4.155 5 C 0.042 3.958 6 C -0.538 4.538 7 H 0.072 0.928 8 C -0.142 4.142 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.205 1.205 12 H -0.214 1.214 13 H -0.201 1.201 14 C -0.174 4.174 15 C 0.309 3.691 16 F -0.159 7.159 17 F -0.174 7.174 18 N -0.108 5.108 19 H 0.088 0.912 20 H 0.103 0.897 21 H 0.102 0.898 22 H 0.191 0.809 23 H 0.051 0.949 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.025 -7.221 1.845 13.308 hybrid contribution 0.815 1.036 -1.005 1.657 sum -10.210 -6.186 0.840 11.967 Atomic orbital electron populations 1.21741 0.74774 1.04070 1.02791 1.48211 1.05945 1.03756 1.58287 1.22323 0.90596 0.92845 1.05885 1.20818 0.96694 0.92584 1.05454 1.17770 0.87786 0.92598 0.97676 1.20995 1.11318 1.29504 0.92001 0.92843 1.24958 0.96528 0.95856 0.96895 1.69950 1.19815 1.33102 1.30774 0.86661 0.78026 0.78099 0.85253 1.20456 1.21370 1.20139 1.22582 0.93072 0.95646 1.06140 1.19014 0.80960 0.96880 0.72231 1.93098 1.76727 1.95921 1.50127 1.93002 1.77326 1.95862 1.51244 1.76947 1.00600 1.08852 1.24442 0.91245 0.89655 0.89798 0.80928 0.94897 0.95581 0.93000 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.14 11.47 59.85 0.69 1.83 15 2 N -0.38 -6.37 4.01 -68.16 -0.27 -6.64 15 3 C 0.03 0.50 11.40 -17.22 -0.20 0.30 15 4 C -0.15 -3.30 5.29 -105.05 -0.56 -3.85 15 5 C 0.08 2.12 5.24 -29.03 -0.15 1.97 15 6 C -0.50 -14.38 8.89 -34.44 -0.31 -14.69 15 7 H 0.05 1.55 7.74 -52.49 -0.41 1.14 15 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 9 N -0.90 -27.16 13.29 55.43 0.74 -26.43 15 10 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 15 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 14 C -0.01 -0.19 6.65 -82.41 -0.55 -0.74 15 15 C 0.37 7.07 5.53 36.01 0.20 7.27 15 16 F -0.18 -3.95 17.12 2.25 0.04 -3.91 15 17 F -0.19 -3.98 16.64 2.25 0.04 -3.94 15 18 N -0.28 -5.45 12.58 33.67 0.42 -5.02 15 19 H 0.07 0.62 8.14 -51.93 -0.42 0.19 15 20 H 0.08 0.71 8.14 -51.92 -0.42 0.28 15 21 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.17 2.74 8.06 -52.49 -0.42 2.32 15 23 H 0.03 0.95 7.40 -51.93 -0.38 0.56 15 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.26 7.47 8.31 -40.82 -0.34 7.14 15 26 H 0.11 1.64 8.14 -51.93 -0.42 1.22 15 LS Contribution 246.63 15.07 3.72 3.72 Total: -1.00 -33.54 246.63 -3.77 -37.31 By element: Atomic # 1 Polarization: -3.56 SS G_CDS: -2.46 Total: -6.02 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -0.97 Total: -6.30 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.89 Total: -38.09 kcal Atomic # 9 Polarization: -7.93 SS G_CDS: 0.08 Total: -7.86 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -33.54 -3.77 -37.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536142519.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.003 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds