Wall clock time and date at job start Mon Mar 30 2020 02:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34953 * 126.03659 * 2 1 4 4 C 1.35317 * 107.74177 * 180.14555 * 3 2 1 5 5 C 1.50700 * 126.03483 * 179.87841 * 4 3 2 6 6 C 1.50702 * 109.46869 * 264.68718 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.39866 * 107.92259 * 359.60965 * 4 3 2 15 15 C 1.50704 * 125.89909 * 180.25889 * 14 4 3 16 16 F 1.39899 * 109.46918 * 300.00499 * 15 14 4 17 17 F 1.39898 * 109.46993 * 60.00267 * 15 14 4 18 18 N 1.30837 * 108.20197 * 0.24586 * 14 4 3 19 19 H 1.08996 * 109.47275 * 270.26106 * 1 2 3 20 20 H 1.09008 * 109.47099 * 30.25910 * 1 2 3 21 21 H 1.08999 * 109.47158 * 150.25348 * 1 2 3 22 22 H 1.07999 * 126.12711 * 0.02562 * 3 2 1 23 23 H 1.09004 * 109.47210 * 144.69011 * 5 4 3 24 24 H 1.08994 * 109.47551 * 24.68664 * 5 4 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 26 26 H 1.08990 * 109.47211 * 180.02562 * 15 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7679 1.5453 -0.0071 6 6 5.2488 1.7306 -1.4232 7 1 4.7206 1.2595 -2.2390 8 6 6.3597 2.5066 -1.6781 9 7 7.0028 3.0806 -0.6848 10 14 6.9512 2.7425 -3.4341 11 1 5.8766 3.3796 -4.2371 12 1 8.1548 3.6124 -3.4384 13 1 7.2928 1.4228 -4.0230 14 6 3.5346 -0.7321 0.0037 15 6 4.7496 -1.6236 0.0086 16 9 5.5162 -1.3734 -1.1347 17 9 5.5153 -1.3621 1.1498 18 7 2.2891 -1.1327 0.0056 19 1 -0.3633 0.0047 1.0276 20 1 -0.3634 0.8877 -0.5179 21 1 -0.3633 -0.8922 -0.5099 22 1 1.9281 2.1194 0.0004 23 1 5.5538 1.0762 0.5851 24 1 4.5199 2.5159 0.4223 25 1 7.7845 3.6263 -0.8641 26 1 4.4347 -2.6670 0.0132 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536142519.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:22 Heat of formation + Delta-G solvation = -49.607183 kcal Electronic energy + Delta-G solvation = -14513.899819 eV Core-core repulsion = 11650.226009 eV Total energy + Delta-G solvation = -2863.673811 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.82749 -47.85899 -42.16075 -35.60937 -34.40407 -32.49098 -29.74595 -28.53949 -26.12237 -24.38426 -21.87909 -20.93950 -18.47258 -18.11226 -18.04413 -17.93368 -16.79970 -16.37825 -16.24640 -14.76222 -14.55476 -14.43369 -14.25454 -14.23242 -13.78032 -13.50194 -13.30917 -13.24676 -12.67794 -12.57437 -12.32921 -11.75462 -11.52968 -11.42665 -10.50982 -10.40038 -9.24056 -8.10392 -6.21041 0.73141 1.40407 1.45016 1.49748 1.52072 1.66862 2.47707 2.87247 3.19574 3.25143 3.68089 4.04397 4.12721 4.15058 4.48263 4.67308 4.70715 4.76403 4.95630 5.37583 5.52636 5.69266 5.82787 6.11873 6.30119 6.55050 6.88856 7.45638 8.98545 Molecular weight = 216.08amu Principal moments of inertia in cm(-1) A = 0.029242 B = 0.010850 C = 0.009216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.308818 B = 2580.040855 C = 3037.534581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.363 5.363 3 C 0.047 3.953 4 C -0.198 4.198 5 C 0.095 3.905 6 C -0.510 4.510 7 H 0.047 0.953 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.957 3.043 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.274 1.274 14 C -0.026 4.026 15 C 0.356 3.644 16 F -0.200 7.200 17 F -0.206 7.206 18 N -0.283 5.283 19 H 0.093 0.907 20 H 0.115 0.885 21 H 0.098 0.902 22 H 0.203 0.797 23 H -0.003 1.003 24 H 0.007 0.993 25 H 0.263 0.737 26 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.286 -6.703 0.907 14.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.147 5.147 3 C -0.099 4.099 4 C -0.209 4.209 5 C 0.057 3.943 6 C -0.548 4.548 7 H 0.065 0.935 8 C -0.193 4.193 9 N -0.573 5.573 10 Si 0.782 3.218 11 H -0.190 1.190 12 H -0.206 1.206 13 H -0.200 1.200 14 C -0.190 4.190 15 C 0.300 3.700 16 F -0.181 7.181 17 F -0.187 7.187 18 N -0.109 5.109 19 H 0.112 0.888 20 H 0.133 0.867 21 H 0.116 0.884 22 H 0.219 0.781 23 H 0.015 0.985 24 H 0.025 0.975 25 H 0.072 0.928 26 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.075 -7.573 0.947 15.139 hybrid contribution 1.284 1.138 -0.667 1.841 sum -11.790 -6.435 0.280 13.435 Atomic orbital electron populations 1.22316 0.70777 1.06327 1.05103 1.48722 1.07955 1.02483 1.55572 1.22609 0.89665 0.94502 1.03095 1.20580 0.96825 0.93318 1.10168 1.17364 0.88889 0.92136 0.95936 1.21254 1.11488 1.29187 0.92872 0.93492 1.25824 0.96687 0.95564 1.01199 1.70075 1.20331 1.33848 1.33001 0.85623 0.77935 0.78095 0.80137 1.19036 1.20601 1.19985 1.22699 0.94155 0.95172 1.07022 1.19627 0.80118 0.99254 0.70967 1.93039 1.77409 1.96248 1.51404 1.92966 1.77737 1.96135 1.51880 1.76894 0.99910 1.09801 1.24294 0.88848 0.86702 0.88352 0.78054 0.98475 0.97464 0.92830 0.81969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.57 11.47 127.77 1.47 3.03 15 2 N -0.36 -11.16 4.01 -369.56 -1.48 -12.64 15 3 C 0.05 1.66 11.40 83.54 0.95 2.62 15 4 C -0.20 -9.01 5.29 -20.14 -0.11 -9.12 15 5 C 0.09 5.23 5.24 29.10 0.15 5.38 15 6 C -0.51 -29.91 8.89 25.60 0.23 -29.68 15 7 H 0.05 2.75 7.74 -2.91 -0.02 2.73 15 8 C 0.00 0.28 5.46 84.66 0.46 0.74 15 9 N -0.93 -57.68 13.29 21.45 0.28 -57.39 15 10 Si 0.96 45.86 29.54 68.60 2.03 47.89 15 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15 13 H -0.27 -13.00 7.11 99.48 0.71 -12.30 15 14 C -0.03 -1.09 6.65 43.10 0.29 -0.80 15 15 C 0.36 13.75 5.53 71.24 0.39 14.14 15 16 F -0.20 -9.04 17.12 44.97 0.77 -8.27 15 17 F -0.21 -8.69 16.64 44.97 0.75 -7.94 15 18 N -0.28 -10.29 12.58 -47.38 -0.60 -10.88 15 19 H 0.09 1.22 8.14 -2.39 -0.02 1.20 15 20 H 0.11 1.32 8.14 -2.38 -0.02 1.30 15 21 H 0.10 1.44 8.14 -2.39 -0.02 1.42 15 22 H 0.20 5.83 8.06 -2.91 -0.02 5.81 15 23 H 0.00 -0.19 7.40 -2.38 -0.02 -0.20 15 24 H 0.01 0.40 8.14 -2.39 -0.02 0.38 15 25 H 0.26 15.33 8.31 -92.70 -0.77 14.56 15 26 H 0.16 4.51 8.14 -2.39 -0.02 4.49 15 Total: -1.00 -73.99 246.63 6.77 -67.22 By element: Atomic # 1 Polarization: -5.47 SS G_CDS: 1.19 Total: -4.28 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 3.83 Total: -13.69 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -1.79 Total: -80.92 kcal Atomic # 9 Polarization: -17.73 SS G_CDS: 1.52 Total: -16.21 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -73.99 6.77 -67.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536142519.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.611 kcal (2) G-P(sol) polarization free energy of solvation -73.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds