Wall clock time and date at job start Mon Mar 30 2020 02:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 O 1.21618 * 119.99850 * 153.66790 * 3 2 1 5 5 N 1.34773 * 120.00419 * 333.66343 * 3 2 1 6 6 C 1.39156 * 120.00117 * 185.59299 * 5 3 2 7 7 C 1.39698 * 119.58122 * 18.95095 * 6 5 3 8 8 C 1.38636 * 119.49686 * 180.02562 * 7 6 5 9 9 C 1.38352 * 118.67311 * 359.74136 * 8 7 6 10 10 C 1.40585 * 119.13298 * 0.52125 * 9 8 7 11 11 C 1.41328 * 119.78723 * 179.75010 * 10 9 8 12 12 H 1.08006 * 119.99936 * 8.66043 * 11 10 9 13 13 C 1.40028 * 120.00184 * 188.66210 * 11 10 9 14 14 N 1.30740 * 120.00315 * 195.97117 * 13 11 10 15 15 Si 1.86805 * 119.99816 * 15.97200 * 13 11 10 16 16 H 1.48498 * 109.46938 * 270.00143 * 15 13 11 17 17 H 1.48504 * 109.46819 * 30.00011 * 15 13 11 18 18 H 1.48497 * 109.46983 * 150.00258 * 15 13 11 19 19 N 1.31928 * 119.57571 * 198.97027 * 6 5 3 20 20 H 4.39222 * 13.43055 * 359.97438 * 4 2 1 21 21 H 0.97002 * 119.99613 * 5.58955 * 5 3 2 22 22 H 1.08009 * 120.24846 * 359.97438 * 7 6 5 23 23 H 1.08000 * 120.66430 * 180.02562 * 8 7 6 24 24 H 1.08002 * 120.43914 * 180.24960 * 9 8 7 25 25 H 0.97004 * 120.00268 * 354.93006 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 8 3.2137 0.9449 -0.4672 5 7 3.2805 -1.0450 0.5178 6 6 4.6670 -0.9948 0.6243 7 6 5.3179 0.2404 0.5785 8 6 6.6994 0.2884 0.6843 9 6 7.3949 -0.8976 0.8384 10 6 6.6828 -2.1093 0.8716 11 6 7.3799 -3.3294 1.0231 12 1 8.4353 -3.3235 1.2526 13 6 6.7022 -4.5459 0.8758 14 7 7.2437 -5.6529 1.3123 15 14 5.0245 -4.5870 0.0554 16 1 3.9669 -4.4071 1.0822 17 1 4.9353 -3.4924 -0.9441 18 1 4.8376 -5.8942 -0.6239 19 7 5.3501 -2.1144 0.7668 20 1 -1.0499 -0.0011 0.0000 21 1 2.7993 -1.8326 0.8163 22 1 4.7492 1.1511 0.4608 23 1 7.2218 1.2330 0.6516 24 1 8.4713 -0.8931 0.9276 25 1 8.1449 -5.6434 1.6713 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001648994370.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:16 Heat of formation + Delta-G solvation = 32.776300 kcal Electronic energy + Delta-G solvation = -13423.628579 eV Core-core repulsion = 10981.923620 eV Total energy + Delta-G solvation = -2441.704960 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.74831 -39.88847 -36.35208 -35.45838 -34.18063 -32.99477 -31.37337 -27.45324 -25.85336 -23.66041 -22.73188 -20.86895 -20.00257 -18.56915 -17.80467 -17.00041 -16.76834 -16.29521 -15.80205 -15.58020 -14.94315 -14.46113 -14.27153 -13.76522 -13.09816 -12.83234 -12.27293 -12.06569 -11.96065 -11.87504 -11.64937 -11.12443 -11.05119 -10.43895 -9.88390 -9.35066 -9.28089 -6.81936 0.16338 0.71629 0.92763 1.29357 1.50710 1.65899 1.91376 2.01024 2.38587 2.43974 2.65126 3.29413 3.54952 4.04837 4.34975 4.59305 4.67706 4.69943 4.77049 5.30667 5.36305 5.39172 5.69178 5.77479 5.90156 6.20016 6.24937 6.37584 6.61384 6.84872 7.47657 7.91879 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.032480 B = 0.010761 C = 0.008276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.849961 B = 2601.290600 C = 3382.400323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 C -0.309 4.309 3 C 0.633 3.367 4 O -0.536 6.536 5 N -0.641 5.641 6 C 0.370 3.630 7 C -0.309 4.309 8 C -0.028 4.028 9 C -0.289 4.289 10 C 0.258 3.742 11 C -0.511 4.511 12 H 0.072 0.928 13 C 0.024 3.976 14 N -0.823 5.823 15 Si 1.171 2.829 16 H -0.273 1.273 17 H -0.293 1.293 18 H -0.318 1.318 19 N -0.607 5.607 20 H 0.292 0.708 21 H 0.421 0.579 22 H 0.147 0.853 23 H 0.146 0.854 24 H 0.118 0.882 25 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.723 7.132 -1.042 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 C -0.312 4.312 3 C 0.423 3.577 4 O -0.414 6.414 5 N -0.286 5.286 6 C 0.139 3.861 7 C -0.333 4.333 8 C -0.052 4.052 9 C -0.311 4.311 10 C 0.133 3.867 11 C -0.543 4.543 12 H 0.090 0.910 13 C -0.194 4.194 14 N -0.445 5.445 15 Si 1.001 2.999 16 H -0.199 1.199 17 H -0.222 1.222 18 H -0.250 1.250 19 N -0.332 5.332 20 H 0.307 0.693 21 H 0.259 0.741 22 H 0.164 0.836 23 H 0.164 0.836 24 H 0.136 0.864 25 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.841 5.994 -1.635 15.171 hybrid contribution 2.252 1.118 0.728 2.617 sum -11.589 7.112 -0.907 13.628 Atomic orbital electron populations 1.26424 0.96110 0.90897 0.88370 1.20934 0.92520 1.08331 1.09367 1.15132 0.84671 0.81375 0.76508 1.90738 1.69320 1.35947 1.45346 1.43103 1.04693 1.20147 1.60632 1.18348 0.83580 0.90390 0.93829 1.21856 0.95617 0.97272 1.18577 1.21330 0.93400 0.98015 0.92474 1.21827 1.00012 0.93041 1.16200 1.18395 0.86383 0.94100 0.87870 1.20683 0.97616 0.91699 1.44346 0.90975 1.28369 1.08673 0.90801 0.91597 1.70630 1.16117 1.30835 1.26961 0.81778 0.70426 0.71413 0.76263 1.19896 1.22151 1.24984 1.66173 1.09399 1.28070 1.29549 0.69261 0.74103 0.83616 0.83586 0.86364 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 19.25 74.32 1.43 1.43 15 2 C -0.31 -7.68 13.62 30.01 0.41 -7.28 15 3 C 0.63 22.25 7.49 85.49 0.64 22.89 15 4 O -0.54 -22.17 13.88 -4.09 -0.06 -22.23 15 5 N -0.64 -24.18 5.40 -315.22 -1.70 -25.88 15 6 C 0.37 17.04 7.51 133.29 1.00 18.04 15 7 C -0.31 -13.75 8.83 22.72 0.20 -13.55 15 8 C -0.03 -1.19 10.15 22.39 0.23 -0.96 15 9 C -0.29 -13.67 9.83 22.87 0.22 -13.44 15 10 C 0.26 13.69 6.27 40.19 0.25 13.94 15 11 C -0.51 -28.47 9.51 23.46 0.22 -28.25 15 12 H 0.07 4.05 8.06 -2.91 -0.02 4.03 15 13 C 0.02 1.30 5.51 85.29 0.47 1.77 15 14 N -0.82 -45.23 13.65 21.84 0.30 -44.93 15 15 Si 1.17 55.95 25.93 68.60 1.78 57.73 15 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 17 H -0.29 -14.54 6.55 99.48 0.65 -13.88 15 18 H -0.32 -14.63 7.11 99.48 0.71 -13.92 15 19 N -0.61 -30.91 5.08 -186.42 -0.95 -31.86 15 20 H 0.29 0.06 7.80 -4.42 -0.03 0.03 15 21 H 0.42 13.77 8.79 -92.71 -0.81 12.96 15 22 H 0.15 6.32 5.33 -3.17 -0.02 6.30 15 23 H 0.15 4.98 8.06 -2.91 -0.02 4.96 15 24 H 0.12 5.19 8.06 -2.91 -0.02 5.17 15 25 H 0.28 15.06 8.73 -92.71 -0.81 14.25 15 Total: -1.00 -68.95 237.48 4.77 -64.18 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.32 Total: 8.41 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 5.08 Total: -5.42 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -2.35 Total: -102.67 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.06 Total: -22.23 kcal Atomic # 14 Polarization: 55.95 SS G_CDS: 1.78 Total: 57.73 kcal Total: -68.95 4.77 -64.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648994370.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.952 kcal (2) G-P(sol) polarization free energy of solvation -68.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds