Wall clock time and date at job start Mon Mar 30 2020 02:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 O 1.42967 * 109.46882 * 119.99591 * 2 1 3 5 5 C 1.43095 * 113.77014 * 61.20565 * 4 2 1 6 6 C 1.53266 * 108.94092 * 57.97057 * 5 4 2 7 7 O 1.42892 * 109.57007 * 185.66660 * 6 5 4 8 8 C 1.42901 * 113.99805 * 209.99626 * 7 6 5 9 9 C 1.50696 * 109.47566 * 179.97438 * 8 7 6 10 10 H 1.08004 * 120.00049 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00491 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99629 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00044 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47208 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.46890 * 120.00420 * 13 11 9 16 16 H 1.48493 * 109.47256 * 240.00035 * 13 11 9 17 17 C 1.53256 * 108.84277 * 305.47453 * 6 5 4 18 18 O 1.42958 * 109.47390 * 239.99497 * 2 1 3 19 19 H 1.08998 * 109.47729 * 300.00216 * 1 2 3 20 20 H 1.09002 * 109.47504 * 60.00628 * 1 2 3 21 21 H 1.09003 * 109.47441 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47553 * 179.97438 * 3 2 1 23 23 H 1.09007 * 109.46866 * 300.00069 * 3 2 1 24 24 H 1.09001 * 109.47462 * 59.99266 * 3 2 1 25 25 H 1.08999 * 109.55643 * 177.80695 * 5 4 2 26 26 H 1.08999 * 109.55852 * 298.02362 * 5 4 2 27 27 H 1.09005 * 109.57087 * 65.41198 * 6 5 4 28 28 H 1.08998 * 109.47586 * 300.00621 * 8 7 6 29 29 H 1.09007 * 109.46707 * 60.00281 * 8 7 6 30 30 H 0.97000 * 119.99579 * 179.97438 * 12 11 9 31 31 H 1.09001 * 109.55755 * 174.36031 * 17 6 5 32 32 H 1.08996 * 109.55968 * 294.68708 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0065 -0.6739 1.1674 5 6 1.6040 -2.0448 1.2467 6 6 2.1043 -2.7830 0.0002 7 8 1.5988 -4.1195 0.0003 8 6 2.4540 -5.0645 -0.6460 9 6 1.8263 -6.4332 -0.5865 10 1 0.8696 -6.5680 -0.1037 11 6 2.4726 -7.5133 -1.1492 12 7 3.6373 -7.3490 -1.7376 13 14 1.6941 -9.2097 -1.0760 14 1 0.3927 -9.1268 -0.3655 15 1 1.4733 -9.7130 -2.4556 16 1 2.5971 -10.1378 -0.3491 17 6 1.6041 -2.0449 -1.2463 18 8 2.0066 -0.6740 -1.1672 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 3.1299 1.4426 0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9564 0.8899 25 1 2.0348 -2.5005 2.1382 26 1 0.5167 -2.1036 1.2958 27 1 3.1941 -2.8047 0.0015 28 1 2.5952 -4.7741 -1.6871 29 1 3.4195 -5.0857 -0.1406 30 1 4.0922 -8.1090 -2.1331 31 1 2.0350 -2.5008 -2.1378 32 1 0.5168 -2.1039 -1.2936 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000199974421.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:48 Heat of formation + Delta-G solvation = -168.786328 kcal Electronic energy + Delta-G solvation = -15165.717577 eV Core-core repulsion = 12511.503629 eV Total energy + Delta-G solvation = -2654.213947 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 216.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.51903 -38.64837 -36.83083 -35.07761 -33.70552 -31.14143 -29.19126 -28.23534 -27.17659 -24.68248 -23.48283 -21.00804 -18.85076 -18.64419 -18.00311 -17.33759 -16.72609 -16.41675 -16.38492 -15.44737 -14.95425 -14.58135 -14.40353 -14.21360 -13.62845 -13.28203 -13.18165 -13.06102 -12.91159 -12.86919 -12.63010 -12.27856 -12.16657 -12.03682 -11.63927 -11.33985 -10.82139 -10.58968 -10.20046 -8.35937 -6.49390 1.39900 1.41165 1.55887 2.28432 2.45598 2.51507 2.98397 3.01327 3.60984 3.64721 3.82468 3.86768 3.92720 4.26315 4.52551 4.55253 4.58834 4.69759 4.73734 4.75513 4.81512 4.84919 5.08869 5.10298 5.20628 5.49104 5.70395 5.89055 6.10637 6.41280 6.71564 7.22444 8.76665 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.071463 B = 0.006049 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.716225 B = 4628.004506 C = 4707.732115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.242 3.758 3 C -0.124 4.124 4 O -0.391 6.391 5 C 0.068 3.932 6 C 0.019 3.981 7 O -0.387 6.387 8 C 0.209 3.791 9 C -0.550 4.550 10 H 0.066 0.934 11 C 0.007 3.993 12 N -0.931 5.931 13 Si 0.986 3.014 14 H -0.262 1.262 15 H -0.271 1.271 16 H -0.272 1.272 17 C 0.043 3.957 18 O -0.396 6.396 19 H 0.095 0.905 20 H 0.090 0.910 21 H 0.056 0.944 22 H 0.063 0.937 23 H 0.096 0.904 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.077 0.923 27 H 0.052 0.948 28 H -0.010 1.010 29 H -0.014 1.014 30 H 0.272 0.728 31 H 0.088 0.912 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 14.227 3.356 15.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.166 3.834 3 C -0.180 4.180 4 O -0.312 6.312 5 C -0.009 4.009 6 C -0.041 4.041 7 O -0.307 6.307 8 C 0.134 3.866 9 C -0.587 4.587 10 H 0.084 0.916 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.809 3.191 14 H -0.186 1.186 15 H -0.197 1.197 16 H -0.197 1.197 17 C -0.033 4.033 18 O -0.317 6.317 19 H 0.114 0.886 20 H 0.109 0.891 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.114 0.886 24 H 0.118 0.882 25 H 0.126 0.874 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.008 0.992 29 H 0.004 0.996 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.629 14.289 3.348 15.718 hybrid contribution 0.141 -1.248 -0.370 1.309 sum -5.488 13.041 2.978 14.459 Atomic orbital electron populations 1.22822 0.94202 1.03526 1.05404 1.23418 0.93052 0.91964 0.74976 1.21681 1.02487 0.88905 1.04964 1.88122 1.76845 1.22647 1.43552 1.22581 1.00702 0.80650 0.96953 1.23243 0.98408 0.84866 0.97560 1.87817 1.47903 1.15848 1.79122 1.19958 0.88934 0.87287 0.90412 1.21396 1.06812 0.92340 1.38173 0.91587 1.25990 0.95258 1.04097 0.93830 1.70082 1.16075 1.33255 1.37551 0.85092 0.78632 0.76997 0.78416 1.18602 1.19658 1.19706 1.23047 1.00496 0.81293 0.98508 1.88106 1.76735 1.22891 1.43977 0.88604 0.89075 0.92502 0.91800 0.88576 0.88204 0.87364 0.90506 0.93014 0.99173 0.99607 0.91940 0.89423 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.33 8.11 71.98 0.58 -3.74 16 2 C 0.24 6.47 1.50 30.59 0.05 6.52 16 3 C -0.12 -2.42 9.21 71.98 0.66 -1.75 16 4 O -0.39 -12.03 10.35 -126.22 -1.31 -13.34 16 5 C 0.07 2.20 6.25 72.07 0.45 2.65 16 6 C 0.02 0.74 3.02 30.77 0.09 0.83 16 7 O -0.39 -18.75 9.98 -148.98 -1.49 -20.24 16 8 C 0.21 11.73 5.51 71.23 0.39 12.13 16 9 C -0.55 -32.42 9.43 25.60 0.24 -32.18 16 10 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 11 C 0.01 0.40 5.46 84.66 0.46 0.86 16 12 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 13 Si 0.99 43.88 29.54 68.60 2.03 45.91 16 14 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 C 0.04 1.55 6.23 72.07 0.45 2.00 16 18 O -0.40 -13.02 10.35 -126.22 -1.31 -14.33 16 19 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 20 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.06 1.37 5.12 -2.39 -0.01 1.36 16 22 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 24 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 26 H 0.08 2.29 6.53 -2.39 -0.02 2.27 16 27 H 0.05 2.21 7.79 -2.38 -0.02 2.19 16 28 H -0.01 -0.56 8.08 -2.39 -0.02 -0.57 16 29 H -0.01 -0.82 8.09 -2.38 -0.02 -0.84 16 30 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.09 3.32 8.08 -2.39 -0.02 3.30 16 32 H 0.07 2.45 6.53 -2.39 -0.02 2.43 16 Total: -1.00 -66.07 264.74 2.68 -63.39 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 1.09 Total: 6.87 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 3.38 Total: -12.70 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.28 Total: -55.56 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -4.10 Total: -47.90 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.07 2.68 -63.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000199974421.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.400 kcal (2) G-P(sol) polarization free energy of solvation -66.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds