Wall clock time and date at job start Mon Mar 30 2020 02:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32851 * 125.66581 * 2 1 4 4 C 1.33239 * 109.18949 * 179.97438 * 3 2 1 5 5 C 1.39791 * 131.55210 * 180.32040 * 4 3 2 6 6 C 1.40537 * 119.01108 * 180.21993 * 5 4 3 7 7 C 1.40510 * 120.77044 * 179.71123 * 6 5 4 8 8 H 1.08002 * 119.99945 * 23.50767 * 7 6 5 9 9 C 1.39968 * 120.00302 * 203.50768 * 7 6 5 10 10 N 1.30824 * 119.99881 * 16.87472 * 9 7 6 11 11 Si 1.86794 * 120.00224 * 196.87476 * 9 7 6 12 12 H 1.48496 * 109.47516 * 179.97438 * 11 9 7 13 13 H 1.48505 * 109.47439 * 300.00131 * 11 9 7 14 14 H 1.48510 * 109.47037 * 59.99854 * 11 9 7 15 15 C 1.46850 * 118.46169 * 359.44741 * 6 5 4 16 16 C 1.34142 * 119.40179 * 0.26731 * 15 6 5 17 17 N 1.37145 * 121.19859 * 0.02562 * 16 15 6 18 18 C 1.35825 * 125.65507 * 179.97438 * 2 1 3 19 19 C 1.50699 * 126.39284 * 0.03602 * 18 2 1 20 20 H 1.08998 * 109.47384 * 89.96919 * 1 2 3 21 21 H 1.08994 * 109.47178 * 209.97509 * 1 2 3 22 22 H 1.09006 * 109.47032 * 329.97269 * 1 2 3 23 23 H 1.08004 * 120.49177 * 359.94179 * 5 4 3 24 24 H 0.97001 * 119.99592 * 180.02562 * 10 9 7 25 25 H 1.08005 * 120.30127 * 180.29634 * 15 6 5 26 26 H 1.08000 * 119.40441 * 180.02562 * 16 15 6 27 27 H 1.08999 * 109.47238 * 269.97801 * 19 18 2 28 28 H 1.08992 * 109.46804 * 29.97964 * 19 18 2 29 29 H 1.09007 * 109.47011 * 149.97698 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2816 1.0793 0.0000 4 6 3.5593 0.7014 0.0006 5 6 4.7451 1.4416 0.0067 6 6 5.9741 0.7599 0.0009 7 6 7.1883 1.4670 0.0006 8 1 7.2243 2.4785 0.3776 9 6 8.3513 0.8606 -0.4882 10 7 8.2662 -0.2095 -1.2360 11 14 10.0247 1.5792 -0.0729 12 1 11.0873 0.7579 -0.7066 13 1 10.1055 2.9721 -0.5815 14 1 10.2118 1.5786 1.4003 15 6 5.9599 -0.7085 0.0010 16 6 4.7849 -1.3557 0.0012 17 7 3.5967 -0.6709 0.0007 18 6 2.2987 -1.1036 0.0005 19 6 1.8343 -2.5373 0.0004 20 1 -0.3634 0.0006 -1.0276 21 1 -0.3633 -0.8901 0.5134 22 1 -0.3633 0.8898 0.5143 23 1 4.7172 2.5213 0.0112 24 1 9.0722 -0.6299 -1.5745 25 1 6.8871 -1.2624 0.0015 26 1 4.7745 -2.4357 0.0018 27 1 1.7221 -2.8830 1.0280 28 1 0.8758 -2.6085 -0.5136 29 1 2.5690 -3.1572 -0.5134 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214413857.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:05 Heat of formation + Delta-G solvation = 58.782390 kcal Electronic energy + Delta-G solvation = -13789.643134 eV Core-core repulsion = 11484.898978 eV Total energy + Delta-G solvation = -2304.744156 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.25960 -36.27966 -33.97061 -32.36090 -31.03561 -29.32140 -27.25824 -26.92233 -23.83513 -21.46708 -20.73216 -19.13959 -17.51932 -16.10610 -15.37346 -15.03399 -14.82176 -13.84900 -13.47846 -12.85076 -12.58773 -12.43314 -12.32045 -12.11865 -11.78862 -11.68932 -11.35330 -11.29475 -11.09204 -10.50792 -10.16915 -9.94973 -9.73432 -8.91413 -8.77670 -7.46175 -7.18199 -6.66903 -4.59610 2.26342 2.56443 2.91297 2.93711 3.01551 3.69441 3.87611 3.93292 4.35754 5.28938 5.44715 5.50652 5.65369 5.72008 5.95715 5.99406 6.15893 6.22794 6.29570 6.41805 6.61131 6.67258 6.79723 6.84247 7.11359 7.51667 7.60615 7.75961 7.93740 8.11435 8.41406 8.49647 8.65560 9.25628 9.80183 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.063427 B = 0.007514 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.343728 B = 3725.429546 C = 4086.335431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.050 3.950 3 N -0.560 5.560 4 C 0.299 3.701 5 C -0.296 4.296 6 C 0.127 3.873 7 C -0.431 4.431 8 H 0.090 0.910 9 C 0.075 3.925 10 N -0.784 5.784 11 Si 0.920 3.080 12 H -0.276 1.276 13 H -0.261 1.261 14 H -0.260 1.260 15 C -0.112 4.112 16 C 0.019 3.981 17 N -0.385 5.385 18 C -0.143 4.143 19 C -0.052 4.052 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.118 0.882 24 H 0.289 0.711 25 H 0.149 0.851 26 H 0.133 0.867 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 -4.511 1.447 5.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.084 4.084 3 N -0.283 5.283 4 C 0.060 3.940 5 C -0.321 4.321 6 C 0.119 3.881 7 C -0.461 4.461 8 H 0.108 0.892 9 C -0.146 4.146 10 N -0.409 5.409 11 Si 0.743 3.257 12 H -0.200 1.200 13 H -0.185 1.185 14 H -0.184 1.184 15 C -0.134 4.134 16 C -0.101 4.101 17 N -0.060 5.060 18 C -0.254 4.254 19 C -0.110 4.110 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.082 0.918 23 H 0.136 0.864 24 H 0.100 0.900 25 H 0.167 0.833 26 H 0.151 0.849 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.373 -3.983 1.300 4.815 hybrid contribution 1.190 -0.699 -0.002 1.380 sum -1.183 -4.682 1.298 5.001 Atomic orbital electron populations 1.19957 0.88978 1.01636 1.01281 1.20314 0.95402 0.88623 1.04066 1.70600 0.98678 1.28502 1.30479 1.20648 0.93657 0.79626 1.00023 1.19811 0.87117 0.97824 1.27344 1.18502 0.92396 0.90173 0.86986 1.19464 0.91505 1.01119 1.33999 0.89164 1.26118 1.02276 0.94104 0.92082 1.69748 1.32442 1.17027 1.21641 0.86153 0.79178 0.80136 0.80220 1.20040 1.18489 1.18409 1.22329 0.95649 0.95631 0.99792 1.21087 0.84080 0.96694 1.08260 1.42398 1.04464 1.08465 1.50639 1.20445 0.82564 0.96450 1.25968 1.19851 1.00317 0.90064 1.00756 0.92126 0.92114 0.91771 0.86397 0.89995 0.83339 0.84948 0.92908 0.91481 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 10.04 36.01 0.36 -0.64 15 2 C 0.05 1.10 7.06 -83.02 -0.59 0.52 15 3 N -0.56 -14.46 11.32 -9.07 -0.10 -14.56 15 4 C 0.30 7.91 7.75 -155.70 -1.21 6.70 15 5 C -0.30 -7.80 9.94 -38.14 -0.38 -8.18 15 6 C 0.13 3.26 5.72 -104.69 -0.60 2.66 15 7 C -0.43 -10.61 9.06 -38.08 -0.34 -10.96 15 8 H 0.09 2.13 7.90 -52.49 -0.41 1.72 15 9 C 0.07 1.69 5.21 -17.33 -0.09 1.60 15 10 N -0.78 -18.08 10.87 55.55 0.60 -17.47 15 11 Si 0.92 16.87 29.59 -169.99 -5.03 11.84 15 12 H -0.28 -4.90 7.11 56.52 0.40 -4.50 15 13 H -0.26 -4.79 7.11 56.52 0.40 -4.39 15 14 H -0.26 -4.74 7.11 56.52 0.40 -4.34 15 15 C -0.11 -2.66 8.81 -37.54 -0.33 -2.99 15 16 C 0.02 0.41 10.76 -16.62 -0.18 0.24 15 17 N -0.39 -9.30 2.96 -58.42 -0.17 -9.47 15 18 C -0.14 -3.10 7.03 -81.23 -0.57 -3.67 15 19 C -0.05 -0.83 9.88 36.01 0.36 -0.48 15 20 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 21 H 0.06 0.84 7.77 -51.93 -0.40 0.43 15 22 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 23 H 0.12 3.04 8.06 -52.48 -0.42 2.62 15 24 H 0.29 5.99 8.30 -40.82 -0.34 5.65 15 25 H 0.15 3.39 6.27 -52.48 -0.33 3.06 15 26 H 0.13 2.47 7.97 -52.49 -0.42 2.05 15 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 28 H 0.07 0.92 7.78 -51.93 -0.40 0.52 15 29 H 0.05 0.78 8.06 -51.93 -0.42 0.36 15 LS Contribution 253.84 15.07 3.83 3.83 Total: -1.00 -28.75 253.84 -7.66 -36.41 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -3.21 Total: 4.63 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -3.57 Total: -15.20 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.33 Total: -41.50 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.03 Total: 11.84 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.75 -7.66 -36.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214413857.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.190 kcal (2) G-P(sol) polarization free energy of solvation -28.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds