Wall clock time and date at job start Mon Mar 30 2020 02:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37966 * 120.07570 * 2 1 4 4 C 1.38342 * 120.15026 * 180.02562 * 3 2 1 5 5 C 1.38385 * 120.30550 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.92527 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47018 * 159.99377 * 6 5 4 8 8 N 1.46906 * 109.47187 * 39.99928 * 6 5 4 9 9 C 1.50697 * 109.47065 * 279.99994 * 6 5 4 10 10 H 1.08002 * 119.99885 * 0.02562 * 9 6 5 11 11 C 1.37878 * 120.00198 * 180.02562 * 9 6 5 12 12 N 1.31517 * 119.99780 * 359.97438 * 11 9 6 13 13 Si 1.86790 * 120.00186 * 180.02562 * 11 9 6 14 14 H 1.48496 * 109.47317 * 89.99722 * 13 11 9 15 15 H 1.48500 * 109.47134 * 210.00223 * 13 11 9 16 16 H 1.48505 * 109.47326 * 329.99754 * 13 11 9 17 17 C 1.37925 * 120.15201 * 0.25469 * 5 4 3 18 18 C 1.39607 * 120.07725 * 180.02562 * 2 1 3 19 19 C 1.43203 * 120.15245 * 359.97314 * 18 2 1 20 20 N 3.48506 * 80.49525 * 180.02562 * 2 1 3 21 21 H 1.08994 * 109.47456 * 89.99332 * 1 2 3 22 22 H 1.09003 * 109.46465 * 210.00007 * 1 2 3 23 23 H 1.09005 * 109.46814 * 329.99163 * 1 2 3 24 24 H 1.07996 * 119.92909 * 0.02562 * 3 2 1 25 25 H 1.07999 * 119.84744 * 180.02562 * 4 3 2 26 26 H 1.00896 * 111.00309 * 176.04524 * 8 6 5 27 27 H 1.00902 * 110.99923 * 300.00687 * 8 6 5 28 28 H 0.97003 * 119.99844 * 180.02562 * 12 11 9 29 29 H 1.08003 * 120.08108 * 179.74865 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1957 -0.0005 5 6 4.2817 0.0019 -0.0016 6 6 5.7887 0.0138 -0.0028 7 1 6.1599 -0.9490 0.3481 8 7 6.2707 1.0783 0.8876 9 6 6.2880 0.2652 -1.4023 10 1 5.5844 0.4029 -2.2100 11 6 7.6429 0.3193 -1.6515 12 7 8.4997 0.1520 -0.6678 13 14 8.2618 0.6315 -3.3861 14 1 8.4156 2.0927 -3.6013 15 1 9.5747 -0.0372 -3.5711 16 1 7.2868 0.0870 -4.3651 17 6 3.6033 -1.1989 -0.0075 18 6 2.2067 -1.2081 -0.0005 19 6 1.4957 -2.4511 -0.0005 20 7 0.9316 -3.4372 -0.0015 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3632 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5140 24 1 1.6586 2.1292 0.0004 25 1 4.1182 2.1331 -0.0001 26 1 7.2773 1.0657 0.9544 27 1 5.9396 1.9816 0.5834 28 1 9.4530 0.1905 -0.8432 29 1 4.1506 -2.1300 -0.0124 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238487400.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:42 Heat of formation + Delta-G solvation = 37.616230 kcal Electronic energy + Delta-G solvation = -13492.253587 eV Core-core repulsion = 11186.591597 eV Total energy + Delta-G solvation = -2305.661990 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.30680 -36.31744 -34.95073 -32.39641 -31.01047 -30.47968 -27.22502 -25.57371 -23.28094 -22.17083 -20.65711 -17.39892 -16.52595 -15.65675 -15.37004 -14.74893 -14.12880 -14.07807 -13.43149 -12.96415 -12.93256 -12.76880 -12.58856 -12.35556 -12.03198 -11.60842 -11.41182 -11.06520 -11.01288 -10.73911 -10.62722 -10.05614 -9.72107 -8.75078 -8.49222 -8.03104 -7.28480 -6.17393 -4.34714 1.23445 1.84292 2.92485 3.17587 3.25994 3.29056 3.35653 4.21138 4.24364 4.37033 5.04383 5.06812 5.10810 5.47206 5.65334 5.68903 5.89738 5.94194 5.98290 6.21771 6.47550 6.51340 6.75783 6.87508 6.99744 7.32805 7.61284 7.66664 7.75691 7.98543 8.57154 8.83153 9.01514 9.37736 10.80274 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.036507 B = 0.007575 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.782018 B = 3695.474267 C = 3861.018826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.065 4.065 3 C -0.126 4.126 4 C -0.073 4.073 5 C -0.030 4.030 6 C 0.239 3.761 7 H 0.050 0.950 8 N -0.850 5.850 9 C -0.547 4.547 10 H 0.058 0.942 11 C 0.068 3.932 12 N -0.892 5.892 13 Si 0.898 3.102 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.069 4.069 18 C -0.045 4.045 19 C 0.272 3.728 20 N -0.445 5.445 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.123 0.877 25 H 0.127 0.873 26 H 0.357 0.643 27 H 0.312 0.688 28 H 0.267 0.733 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.121 3.473 0.968 9.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.068 4.068 3 C -0.144 4.144 4 C -0.092 4.092 5 C -0.031 4.031 6 C 0.129 3.871 7 H 0.068 0.932 8 N -0.380 5.380 9 C -0.587 4.587 10 H 0.076 0.924 11 C -0.135 4.135 12 N -0.531 5.531 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.090 4.090 18 C -0.049 4.049 19 C -0.042 4.042 20 N -0.121 5.121 21 H 0.089 0.911 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.141 0.859 25 H 0.145 0.855 26 H 0.174 0.826 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.196 1.528 1.594 10.432 hybrid contribution 1.248 0.860 -1.923 2.448 sum -8.948 2.388 -0.329 9.267 Atomic orbital electron populations 1.20797 0.91449 1.02564 1.02306 1.19651 0.95314 0.91742 1.00068 1.20866 0.94371 0.96614 1.02585 1.21216 0.93084 0.98888 0.95998 1.20430 0.98501 0.91374 0.92787 1.18033 0.84018 0.93804 0.91285 0.93222 1.59541 1.18732 1.06164 1.53568 1.21806 0.91880 1.50394 0.94612 0.92396 1.25016 0.96756 0.94300 0.97465 1.69737 1.02532 1.49402 1.31387 0.86499 0.78258 0.78359 0.84359 1.20562 1.21078 1.19780 1.21059 0.91015 0.99199 0.97763 1.15868 0.92337 0.86067 1.10598 1.25837 0.92728 0.92803 0.92857 1.81171 1.09544 1.11094 1.10288 0.91149 0.92180 0.91111 0.85889 0.85549 0.82615 0.87886 0.92341 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.61 36.01 0.35 -0.95 15 2 C -0.07 -0.93 5.91 -104.21 -0.62 -1.55 15 3 C -0.13 -1.79 9.69 -39.64 -0.38 -2.17 15 4 C -0.07 -1.23 9.29 -39.49 -0.37 -1.59 15 5 C -0.03 -0.59 4.89 -104.68 -0.51 -1.10 15 6 C 0.24 5.48 2.94 -70.01 -0.21 5.28 15 7 H 0.05 1.26 8.00 -51.93 -0.42 0.85 15 8 N -0.85 -18.69 9.02 -6.65 -0.06 -18.75 15 9 C -0.55 -13.77 8.70 -34.44 -0.30 -14.07 15 10 H 0.06 1.47 7.74 -52.49 -0.41 1.07 15 11 C 0.07 1.73 5.38 -17.82 -0.10 1.63 15 12 N -0.89 -23.46 11.54 55.43 0.64 -22.82 15 13 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 15 14 H -0.28 -6.21 7.11 56.52 0.40 -5.80 15 15 H -0.29 -6.41 7.11 56.52 0.40 -6.01 15 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 17 C -0.07 -1.25 9.37 -39.17 -0.37 -1.61 15 18 C -0.05 -0.73 5.73 -106.93 -0.61 -1.34 15 19 C 0.27 4.47 13.80 -22.47 -0.31 4.16 15 20 N -0.44 -7.83 18.54 41.84 0.78 -7.05 15 21 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.06 0.71 7.09 -51.93 -0.37 0.34 15 23 H 0.07 0.66 8.09 -51.93 -0.42 0.24 15 24 H 0.12 1.37 8.06 -52.49 -0.42 0.95 15 25 H 0.13 2.05 6.65 -52.49 -0.35 1.70 15 26 H 0.36 8.54 7.08 -39.29 -0.28 8.26 15 27 H 0.31 6.37 7.33 -39.29 -0.29 6.08 15 28 H 0.27 6.74 8.31 -40.82 -0.34 6.40 15 29 H 0.13 2.23 8.04 -52.48 -0.42 1.81 15 LS Contribution 259.78 15.07 3.91 3.91 Total: -1.00 -26.38 259.78 -6.10 -32.49 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -2.93 Total: 10.45 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -3.42 Total: -13.31 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 1.36 Total: -48.63 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -26.38 -6.10 -32.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238487400.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.102 kcal (2) G-P(sol) polarization free energy of solvation -26.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds