Wall clock time and date at job start Mon Mar 30 2020 02:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37966 * 120.07570 * 2 1 4 4 C 1.38342 * 120.15026 * 180.02562 * 3 2 1 5 5 C 1.38385 * 120.30550 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.92527 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47018 * 159.99377 * 6 5 4 8 8 N 1.46906 * 109.47187 * 39.99928 * 6 5 4 9 9 C 1.50697 * 109.47065 * 279.99994 * 6 5 4 10 10 H 1.08002 * 119.99885 * 0.02562 * 9 6 5 11 11 C 1.37878 * 120.00198 * 180.02562 * 9 6 5 12 12 N 1.31517 * 119.99780 * 359.97438 * 11 9 6 13 13 Si 1.86790 * 120.00186 * 180.02562 * 11 9 6 14 14 H 1.48496 * 109.47317 * 89.99722 * 13 11 9 15 15 H 1.48500 * 109.47134 * 210.00223 * 13 11 9 16 16 H 1.48505 * 109.47326 * 329.99754 * 13 11 9 17 17 C 1.37925 * 120.15201 * 0.25469 * 5 4 3 18 18 C 1.39607 * 120.07725 * 180.02562 * 2 1 3 19 19 C 1.43203 * 120.15245 * 359.97314 * 18 2 1 20 20 N 3.48506 * 80.49525 * 180.02562 * 2 1 3 21 21 H 1.08994 * 109.47456 * 89.99332 * 1 2 3 22 22 H 1.09003 * 109.46465 * 210.00007 * 1 2 3 23 23 H 1.09005 * 109.46814 * 329.99163 * 1 2 3 24 24 H 1.07996 * 119.92909 * 0.02562 * 3 2 1 25 25 H 1.07999 * 119.84744 * 180.02562 * 4 3 2 26 26 H 1.00896 * 111.00309 * 176.04524 * 8 6 5 27 27 H 1.00902 * 110.99923 * 300.00687 * 8 6 5 28 28 H 0.97003 * 119.99844 * 180.02562 * 12 11 9 29 29 H 1.08003 * 120.08108 * 179.74865 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1957 -0.0005 5 6 4.2817 0.0019 -0.0016 6 6 5.7887 0.0138 -0.0028 7 1 6.1599 -0.9490 0.3481 8 7 6.2707 1.0783 0.8876 9 6 6.2880 0.2652 -1.4023 10 1 5.5844 0.4029 -2.2100 11 6 7.6429 0.3193 -1.6515 12 7 8.4997 0.1520 -0.6678 13 14 8.2618 0.6315 -3.3861 14 1 8.4156 2.0927 -3.6013 15 1 9.5747 -0.0372 -3.5711 16 1 7.2868 0.0870 -4.3651 17 6 3.6033 -1.1989 -0.0075 18 6 2.2067 -1.2081 -0.0005 19 6 1.4957 -2.4511 -0.0005 20 7 0.9316 -3.4372 -0.0015 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3632 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5140 24 1 1.6586 2.1292 0.0004 25 1 4.1182 2.1331 -0.0001 26 1 7.2773 1.0657 0.9544 27 1 5.9396 1.9816 0.5834 28 1 9.4530 0.1905 -0.8432 29 1 4.1506 -2.1300 -0.0124 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238487400.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:42 Heat of formation + Delta-G solvation = 22.122196 kcal Electronic energy + Delta-G solvation = -13492.925459 eV Core-core repulsion = 11186.591597 eV Total energy + Delta-G solvation = -2306.333862 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.61828 -37.73947 -36.55831 -34.00674 -32.43079 -31.93645 -28.67192 -27.26822 -24.57432 -23.74679 -22.02157 -18.92038 -18.36634 -17.15089 -16.67788 -16.45252 -15.59936 -15.31928 -14.79708 -14.75903 -14.13525 -14.06689 -13.97956 -13.67056 -13.38194 -13.01715 -12.99085 -12.75442 -12.51466 -12.37665 -12.02875 -11.83401 -11.38965 -10.68782 -9.77279 -9.41742 -9.09681 -8.09199 -6.35143 -0.06858 0.56393 1.39581 1.43154 1.51766 1.59909 2.01688 2.39405 2.91983 3.01644 3.09756 3.91526 3.99265 4.22841 4.45656 4.59083 4.74929 4.80663 4.82949 4.86566 5.07815 5.26921 5.32646 5.53833 5.58011 5.68670 5.89419 6.08966 6.12274 6.43918 6.67739 6.95472 7.16924 7.41979 8.84489 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.036507 B = 0.007575 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.782018 B = 3695.474267 C = 3861.018826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.113 4.113 4 C -0.075 4.075 5 C -0.060 4.060 6 C 0.242 3.758 7 H 0.012 0.988 8 N -0.842 5.842 9 C -0.557 4.557 10 H 0.052 0.948 11 C 0.024 3.976 12 N -0.916 5.916 13 Si 0.956 3.044 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.081 4.081 18 C -0.050 4.050 19 C 0.286 3.714 20 N -0.465 5.465 21 H 0.084 0.916 22 H 0.054 0.946 23 H 0.100 0.900 24 H 0.166 0.834 25 H 0.131 0.869 26 H 0.346 0.654 27 H 0.321 0.679 28 H 0.267 0.733 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.073 4.948 0.420 12.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.053 4.053 3 C -0.130 4.130 4 C -0.095 4.095 5 C -0.060 4.060 6 C 0.131 3.869 7 H 0.030 0.970 8 N -0.371 5.371 9 C -0.596 4.596 10 H 0.070 0.930 11 C -0.177 4.177 12 N -0.555 5.555 13 Si 0.782 3.218 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.102 4.102 18 C -0.054 4.054 19 C -0.028 4.028 20 N -0.142 5.142 21 H 0.103 0.897 22 H 0.073 0.927 23 H 0.119 0.881 24 H 0.183 0.817 25 H 0.149 0.851 26 H 0.160 0.840 27 H 0.132 0.868 28 H 0.076 0.924 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.168 3.009 1.048 12.578 hybrid contribution 1.788 0.403 -1.721 2.514 sum -10.380 3.412 -0.673 10.947 Atomic orbital electron populations 1.20896 0.88727 1.03829 1.03577 1.20091 0.97173 0.90819 0.97201 1.21229 0.93102 0.98249 1.00432 1.21338 0.94550 0.97870 0.95700 1.20134 0.96522 0.93119 0.96260 1.17814 0.86713 0.92163 0.90161 0.97049 1.59494 1.17713 1.06582 1.53307 1.22058 0.92001 1.50010 0.95556 0.93016 1.25703 0.97060 0.94318 1.00605 1.69841 1.02623 1.50189 1.32868 0.85588 0.77373 0.78400 0.80435 1.19761 1.21201 1.19891 1.20968 0.92063 0.98477 0.98736 1.15886 0.91471 0.86833 1.11205 1.25810 0.92198 0.92565 0.92207 1.81183 1.10398 1.11472 1.11119 0.89711 0.92695 0.88140 0.81678 0.85089 0.83992 0.86800 0.92380 0.86614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 9.61 71.24 0.68 -1.40 15 2 C -0.05 -1.27 5.91 -19.60 -0.12 -1.38 15 3 C -0.11 -2.75 9.69 22.23 0.22 -2.54 15 4 C -0.08 -2.41 9.29 22.33 0.21 -2.20 15 5 C -0.06 -2.33 4.89 -19.90 -0.10 -2.43 15 6 C 0.24 11.45 2.94 43.42 0.13 11.58 15 7 H 0.01 0.62 8.00 -2.39 -0.02 0.60 15 8 N -0.84 -37.65 9.02 -174.95 -1.58 -39.23 15 9 C -0.56 -28.45 8.70 25.60 0.22 -28.23 15 10 H 0.05 2.65 7.74 -2.91 -0.02 2.63 15 11 C 0.02 1.21 5.38 84.65 0.46 1.67 15 12 N -0.92 -49.09 11.54 21.45 0.25 -48.84 15 13 Si 0.96 41.37 29.54 68.60 2.03 43.40 15 14 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 15 H -0.29 -12.36 7.11 99.48 0.71 -11.65 15 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 17 C -0.08 -2.96 9.37 22.54 0.21 -2.75 15 18 C -0.05 -1.56 5.73 -21.36 -0.12 -1.68 15 19 C 0.29 9.10 13.80 88.33 1.22 10.32 15 20 N -0.47 -15.95 18.54 19.01 0.35 -15.59 15 21 H 0.08 1.39 8.14 -2.39 -0.02 1.37 15 22 H 0.05 1.10 7.09 -2.39 -0.02 1.08 15 23 H 0.10 1.30 8.09 -2.38 -0.02 1.28 15 24 H 0.17 2.71 8.06 -2.91 -0.02 2.69 15 25 H 0.13 4.00 6.65 -2.91 -0.02 3.98 15 26 H 0.35 16.93 7.08 -89.70 -0.63 16.29 15 27 H 0.32 13.11 7.33 -89.69 -0.66 12.45 15 28 H 0.27 13.69 8.31 -92.71 -0.77 12.92 15 29 H 0.12 4.31 8.04 -2.91 -0.02 4.29 15 Total: -1.00 -57.10 259.78 3.95 -53.15 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -0.11 Total: 26.16 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 3.01 Total: -19.04 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -0.98 Total: -103.66 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -57.10 3.95 -53.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238487400.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.270 kcal (2) G-P(sol) polarization free energy of solvation -57.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds