Wall clock time and date at job start Mon Mar 30 2020 02:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.47203 * 109.47459 * 2 1 4 4 N 2.60800 * 109.47348 * 0.02562 * 2 1 3 5 5 C 1.50701 * 109.46863 * 240.00563 * 2 1 3 6 6 H 1.08002 * 119.99915 * 244.75714 * 5 2 1 7 7 C 1.37882 * 120.00171 * 64.76290 * 5 2 1 8 8 N 1.31503 * 119.99775 * 359.97438 * 7 5 2 9 9 Si 1.86798 * 119.99826 * 180.02562 * 7 5 2 10 10 H 1.48503 * 109.47428 * 60.00040 * 9 7 5 11 11 H 1.48500 * 109.46835 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47139 * 299.99569 * 9 7 5 13 13 C 1.50701 * 109.47573 * 120.00675 * 2 1 3 14 14 C 1.38282 * 119.92404 * 54.38667 * 13 2 1 15 15 C 1.38104 * 120.07140 * 179.72930 * 14 13 2 16 16 C 1.38902 * 119.92712 * 0.54943 * 15 14 13 17 17 N 1.39677 * 120.07687 * 179.74476 * 16 15 14 18 18 C 1.38915 * 119.85139 * 359.72941 * 16 15 14 19 19 C 1.38102 * 119.92386 * 359.97438 * 18 16 15 20 20 H 1.09002 * 109.46736 * 299.99737 * 1 2 3 21 21 H 1.09001 * 109.47359 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47266 * 59.99036 * 1 2 3 23 23 H 0.97005 * 120.00063 * 179.97438 * 8 7 5 24 24 H 1.08004 * 119.96401 * 359.97438 * 14 13 2 25 25 H 1.08003 * 120.03224 * 180.27881 * 15 14 13 26 26 H 0.96997 * 120.00161 * 179.97438 * 17 16 15 27 27 H 0.97001 * 119.99796 * 359.97438 * 17 16 15 28 28 H 1.08000 * 120.03802 * 179.97438 * 18 16 15 29 29 H 1.07994 * 119.96668 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3994 2.4588 0.0011 5 6 2.0322 -0.7103 -1.2306 6 1 2.5883 -1.6311 -1.1334 7 6 1.7820 -0.1846 -2.4804 8 7 1.1046 0.9363 -2.5987 9 14 2.4040 -1.0655 -4.0057 10 1 1.8158 -2.4278 -4.0652 11 1 2.0058 -0.3017 -5.2154 12 1 3.8844 -1.1676 -3.9493 13 6 2.0324 -0.7105 1.2304 14 6 1.6044 -1.9959 1.5078 15 6 2.0673 -2.6519 2.6315 16 6 2.9547 -2.0151 3.4895 17 7 3.4207 -2.6737 4.6296 18 6 3.3782 -0.7217 3.2109 19 6 2.9162 -0.0736 2.0822 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5140 -0.8899 23 1 0.9289 1.3063 -3.4780 24 1 0.9106 -2.4887 0.8428 25 1 1.7361 -3.6575 2.8451 26 1 4.0407 -2.2281 5.2279 27 1 3.1242 -3.5768 4.8232 28 1 4.0678 -0.2235 3.8761 29 1 3.2452 0.9317 1.8647 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238803496.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:57 Heat of formation + Delta-G solvation = 42.520242 kcal Electronic energy + Delta-G solvation = -13831.415562 eV Core-core repulsion = 11525.966226 eV Total energy + Delta-G solvation = -2305.449336 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.06501 -36.31554 -33.98890 -33.09206 -30.92710 -30.25349 -27.06254 -25.37291 -23.02319 -21.94002 -20.40645 -17.49944 -16.73407 -16.24930 -15.65455 -14.73799 -13.91379 -13.51607 -13.29317 -13.01866 -12.77845 -12.51413 -11.79126 -11.60824 -11.32815 -11.10301 -10.97308 -10.82711 -10.62965 -10.46400 -10.09145 -9.88055 -9.58881 -9.13329 -8.60563 -8.31030 -6.92748 -6.18126 -4.31381 2.04912 2.25468 3.26611 3.32361 3.34330 4.18059 4.26101 4.42615 4.51879 4.55777 5.11123 5.42838 5.52256 5.77145 5.97411 6.11129 6.21731 6.36647 6.67277 6.73159 6.82518 6.86580 7.03325 7.16772 7.42713 7.52231 7.60892 7.82466 7.91692 8.03259 8.06017 8.69146 9.29724 9.37521 10.85418 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.034920 B = 0.009432 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.645629 B = 2967.811805 C = 3316.553645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.193 3.807 3 C 0.279 3.721 4 N -0.522 5.522 5 C -0.514 4.514 6 H 0.074 0.926 7 C 0.068 3.932 8 N -0.875 5.875 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.275 1.275 13 C -0.085 4.085 14 C -0.057 4.057 15 C -0.198 4.198 16 C 0.190 3.810 17 N -0.888 5.888 18 C -0.196 4.196 19 C -0.081 4.081 20 H 0.021 0.979 21 H 0.051 0.949 22 H 0.082 0.918 23 H 0.268 0.732 24 H 0.127 0.873 25 H 0.112 0.888 26 H 0.391 0.609 27 H 0.392 0.608 28 H 0.109 0.891 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.677 -8.143 9.511 12.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.189 3.811 3 C -0.037 4.037 4 N -0.199 5.199 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.511 5.511 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.201 1.201 13 C -0.088 4.088 14 C -0.075 4.075 15 C -0.221 4.221 16 C 0.088 3.912 17 N -0.429 5.429 18 C -0.219 4.219 19 C -0.100 4.100 20 H 0.041 0.959 21 H 0.070 0.930 22 H 0.101 0.899 23 H 0.078 0.922 24 H 0.145 0.855 25 H 0.130 0.870 26 H 0.219 0.781 27 H 0.219 0.781 28 H 0.128 0.872 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.143 -6.338 9.304 11.315 hybrid contribution 0.414 -0.913 -0.680 1.211 sum 1.557 -7.250 8.624 11.373 Atomic orbital electron populations 1.21795 0.94694 1.00857 1.01042 1.14900 0.93296 0.80959 0.91930 1.29692 0.90818 0.94510 0.88650 1.80826 1.12303 1.13549 1.13234 1.20897 1.37054 1.09130 0.88156 0.90790 1.25069 0.94328 0.94772 0.99513 1.69852 1.37920 1.18675 1.24622 0.86467 0.79458 0.79631 0.81495 1.19723 1.21222 1.20052 1.19777 0.98103 0.94982 0.95974 1.20704 0.98055 0.93668 0.95117 1.20491 1.03423 1.00375 0.97768 1.17683 0.94055 0.91833 0.87612 1.42334 1.54879 1.18789 1.26877 1.20423 1.06236 0.94557 1.00676 1.20941 0.96254 0.99359 0.93441 0.95949 0.92958 0.89879 0.92205 0.85509 0.86977 0.78139 0.78091 0.87243 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 8.00 37.16 0.30 -2.45 15 2 C 0.19 4.54 0.53 -159.60 -0.08 4.45 15 3 C 0.28 7.22 10.19 -20.76 -0.21 7.01 15 4 N -0.52 -14.10 18.46 42.15 0.78 -13.32 15 5 C -0.51 -12.97 7.76 -34.44 -0.27 -13.24 15 6 H 0.07 1.83 7.69 -52.49 -0.40 1.42 15 7 C 0.07 1.77 5.14 -17.82 -0.09 1.68 15 8 N -0.88 -23.90 10.51 55.43 0.58 -23.31 15 9 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 15 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 15 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 13 C -0.09 -1.76 4.70 -104.59 -0.49 -2.25 15 14 C -0.06 -1.02 8.87 -39.61 -0.35 -1.37 15 15 C -0.20 -3.09 9.90 -39.38 -0.39 -3.48 15 16 C 0.19 2.88 6.75 -83.79 -0.57 2.31 15 17 N -0.89 -9.76 9.09 32.41 0.29 -9.47 15 18 C -0.20 -3.28 9.90 -39.38 -0.39 -3.67 15 19 C -0.08 -1.60 9.14 -39.61 -0.36 -1.96 15 20 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 21 H 0.05 1.02 7.09 -51.93 -0.37 0.66 15 22 H 0.08 2.02 6.46 -51.93 -0.34 1.68 15 23 H 0.27 7.09 8.31 -40.82 -0.34 6.76 15 24 H 0.13 2.15 7.24 -52.48 -0.38 1.77 15 25 H 0.11 1.45 8.06 -52.48 -0.42 1.02 15 26 H 0.39 3.59 8.84 -40.82 -0.36 3.23 15 27 H 0.39 3.48 8.84 -40.82 -0.36 3.12 15 28 H 0.11 1.59 8.06 -52.49 -0.42 1.16 15 29 H 0.11 2.39 6.44 -52.49 -0.34 2.05 15 LS Contribution 254.96 15.07 3.84 3.84 Total: -1.00 -29.13 254.96 -5.38 -34.51 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -2.95 Total: 5.41 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -2.91 Total: -12.98 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 1.66 Total: -46.11 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.13 -5.38 -34.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238803496.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.032 kcal (2) G-P(sol) polarization free energy of solvation -29.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds