Wall clock time and date at job start Mon Mar 30 2020 02:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.47203 * 109.47459 * 2 1 4 4 N 2.60800 * 109.47348 * 0.02562 * 2 1 3 5 5 C 1.50701 * 109.46863 * 240.00563 * 2 1 3 6 6 H 1.08002 * 119.99915 * 244.75714 * 5 2 1 7 7 C 1.37882 * 120.00171 * 64.76290 * 5 2 1 8 8 N 1.31503 * 119.99775 * 359.97438 * 7 5 2 9 9 Si 1.86798 * 119.99826 * 180.02562 * 7 5 2 10 10 H 1.48503 * 109.47428 * 60.00040 * 9 7 5 11 11 H 1.48500 * 109.46835 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47139 * 299.99569 * 9 7 5 13 13 C 1.50701 * 109.47573 * 120.00675 * 2 1 3 14 14 C 1.38282 * 119.92404 * 54.38667 * 13 2 1 15 15 C 1.38104 * 120.07140 * 179.72930 * 14 13 2 16 16 C 1.38902 * 119.92712 * 0.54943 * 15 14 13 17 17 N 1.39677 * 120.07687 * 179.74476 * 16 15 14 18 18 C 1.38915 * 119.85139 * 359.72941 * 16 15 14 19 19 C 1.38102 * 119.92386 * 359.97438 * 18 16 15 20 20 H 1.09002 * 109.46736 * 299.99737 * 1 2 3 21 21 H 1.09001 * 109.47359 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47266 * 59.99036 * 1 2 3 23 23 H 0.97005 * 120.00063 * 179.97438 * 8 7 5 24 24 H 1.08004 * 119.96401 * 359.97438 * 14 13 2 25 25 H 1.08003 * 120.03224 * 180.27881 * 15 14 13 26 26 H 0.96997 * 120.00161 * 179.97438 * 17 16 15 27 27 H 0.97001 * 119.99796 * 359.97438 * 17 16 15 28 28 H 1.08000 * 120.03802 * 179.97438 * 18 16 15 29 29 H 1.07994 * 119.96668 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3994 2.4588 0.0011 5 6 2.0322 -0.7103 -1.2306 6 1 2.5883 -1.6311 -1.1334 7 6 1.7820 -0.1846 -2.4804 8 7 1.1046 0.9363 -2.5987 9 14 2.4040 -1.0655 -4.0057 10 1 1.8158 -2.4278 -4.0652 11 1 2.0058 -0.3017 -5.2154 12 1 3.8844 -1.1676 -3.9493 13 6 2.0324 -0.7105 1.2304 14 6 1.6044 -1.9959 1.5078 15 6 2.0673 -2.6519 2.6315 16 6 2.9547 -2.0151 3.4895 17 7 3.4207 -2.6737 4.6296 18 6 3.3782 -0.7217 3.2109 19 6 2.9162 -0.0736 2.0822 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5140 -0.8899 23 1 0.9289 1.3063 -3.4780 24 1 0.9106 -2.4887 0.8428 25 1 1.7361 -3.6575 2.8451 26 1 4.0407 -2.2281 5.2279 27 1 3.1242 -3.5768 4.8232 28 1 4.0678 -0.2235 3.8761 29 1 3.2452 0.9317 1.8647 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238803496.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:57 Heat of formation + Delta-G solvation = 24.413163 kcal Electronic energy + Delta-G solvation = -13832.200744 eV Core-core repulsion = 11525.966226 eV Total energy + Delta-G solvation = -2306.234518 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.46399 -37.98347 -35.71660 -34.75090 -32.62430 -31.58574 -28.44246 -27.28626 -24.62915 -23.34488 -21.87534 -19.34759 -18.04218 -17.43471 -17.12467 -16.64974 -15.48962 -14.96909 -14.82704 -14.66499 -14.13850 -13.88444 -13.59457 -13.37604 -13.10923 -12.99614 -12.79543 -12.64114 -12.26395 -12.22610 -11.63034 -11.46261 -11.23335 -10.84013 -10.56389 -9.63988 -8.25740 -8.02467 -6.32568 0.71379 0.90505 1.48171 1.49874 1.56893 2.36129 2.43414 2.53446 3.13448 3.19918 3.20592 3.85775 4.20423 4.30404 4.45467 4.73282 4.88871 4.97966 5.08993 5.11994 5.36083 5.37544 5.56516 5.64469 5.71506 5.97940 6.03014 6.14635 6.25315 6.71423 6.79025 7.20101 7.29647 7.39054 8.87642 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.034920 B = 0.009432 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.645629 B = 2967.811805 C = 3316.553645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.184 3.816 3 C 0.285 3.715 4 N -0.558 5.558 5 C -0.517 4.517 6 H 0.077 0.923 7 C 0.022 3.978 8 N -0.907 5.907 9 Si 0.959 3.041 10 H -0.255 1.255 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.115 4.115 14 C -0.059 4.059 15 C -0.194 4.194 16 C 0.203 3.797 17 N -0.869 5.869 18 C -0.203 4.203 19 C -0.100 4.100 20 H 0.032 0.968 21 H 0.073 0.927 22 H 0.054 0.946 23 H 0.263 0.737 24 H 0.134 0.866 25 H 0.146 0.854 26 H 0.404 0.596 27 H 0.407 0.593 28 H 0.129 0.871 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.012 -10.775 10.967 15.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.180 3.820 3 C -0.029 4.029 4 N -0.236 5.236 5 C -0.555 4.555 6 H 0.095 0.905 7 C -0.180 4.180 8 N -0.543 5.543 9 Si 0.784 3.216 10 H -0.179 1.179 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.119 4.119 14 C -0.077 4.077 15 C -0.216 4.216 16 C 0.098 3.902 17 N -0.410 5.410 18 C -0.225 4.225 19 C -0.119 4.119 20 H 0.051 0.949 21 H 0.092 0.908 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.152 0.848 25 H 0.164 0.836 26 H 0.233 0.767 27 H 0.237 0.763 28 H 0.147 0.853 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.489 -9.009 10.807 14.148 hybrid contribution 0.356 -0.152 -0.989 1.062 sum 1.845 -9.161 9.818 13.554 Atomic orbital electron populations 1.21685 0.93814 1.01943 1.00071 1.15142 0.94030 0.79670 0.93146 1.30395 0.89964 0.95053 0.87525 1.80783 1.13523 1.14698 1.14600 1.21209 1.36328 1.09098 0.88893 0.90453 1.25796 0.94578 0.95350 1.02226 1.69991 1.39493 1.20162 1.24698 0.85576 0.78563 0.79303 0.78132 1.17894 1.21763 1.20396 1.19581 1.00274 0.96352 0.95652 1.20794 0.98164 0.92619 0.96153 1.20794 1.02642 1.01579 0.96583 1.17752 0.92930 0.91178 0.88301 1.42290 1.54096 1.19294 1.25352 1.20565 1.06539 0.95429 0.99991 1.20832 0.97286 0.98720 0.95056 0.94929 0.90790 0.92681 0.92744 0.84843 0.83581 0.76737 0.76328 0.85325 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 8.00 71.98 0.58 -4.54 15 2 C 0.18 8.72 0.53 -55.48 -0.03 8.69 15 3 C 0.29 15.19 10.19 89.44 0.91 16.10 15 4 N -0.56 -31.21 18.46 20.01 0.37 -30.84 15 5 C -0.52 -26.09 7.76 25.60 0.20 -25.89 15 6 H 0.08 3.77 7.69 -2.91 -0.02 3.75 15 7 C 0.02 1.14 5.14 84.66 0.44 1.58 15 8 N -0.91 -50.57 10.51 21.45 0.23 -50.35 15 9 Si 0.96 41.64 29.54 68.60 2.03 43.67 15 10 H -0.25 -10.27 7.11 99.48 0.71 -9.57 15 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 15 12 H -0.28 -12.13 7.11 99.48 0.71 -11.43 15 13 C -0.12 -4.70 4.70 -19.84 -0.09 -4.79 15 14 C -0.06 -1.98 8.87 22.25 0.20 -1.78 15 15 C -0.19 -5.29 9.90 22.40 0.22 -5.07 15 16 C 0.20 5.41 6.75 38.21 0.26 5.67 15 17 N -0.87 -15.11 9.09 -51.37 -0.47 -15.58 15 18 C -0.20 -6.36 9.90 22.40 0.22 -6.14 15 19 C -0.10 -3.93 9.14 22.25 0.20 -3.73 15 20 H 0.03 1.31 8.14 -2.39 -0.02 1.29 15 21 H 0.07 2.85 7.09 -2.39 -0.02 2.83 15 22 H 0.05 2.72 6.46 -2.38 -0.02 2.70 15 23 H 0.26 14.31 8.31 -92.70 -0.77 13.54 15 24 H 0.13 4.22 7.24 -2.91 -0.02 4.20 15 25 H 0.15 2.99 8.06 -2.91 -0.02 2.96 15 26 H 0.40 5.60 8.84 -92.71 -0.82 4.78 15 27 H 0.41 5.12 8.84 -92.71 -0.82 4.30 15 28 H 0.13 3.43 8.06 -2.91 -0.02 3.41 15 29 H 0.09 3.87 6.44 -2.91 -0.02 3.85 15 Total: -1.00 -63.28 254.96 4.80 -58.48 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -0.45 Total: 14.52 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 3.10 Total: -19.90 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: 0.13 Total: -96.76 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -63.28 4.80 -58.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238803496.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.890 kcal (2) G-P(sol) polarization free energy of solvation -63.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds