Wall clock time and date at job start Mon Mar 30 2020 02:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.36913 * 125.04530 * 2 1 4 4 H 0.96999 * 124.98648 * 359.97438 * 3 2 1 5 5 C 1.37421 * 110.02679 * 180.23821 * 3 2 1 6 6 N 1.32650 * 133.19821 * 179.79477 * 5 3 2 7 7 C 1.31586 * 121.67282 * 179.97438 * 6 5 3 8 8 C 1.38666 * 121.58556 * 0.02567 * 7 6 5 9 9 C 1.38198 * 119.41085 * 359.93927 * 8 7 6 10 10 C 1.39694 * 118.03636 * 0.07109 * 9 8 7 11 11 C 1.34227 * 125.04118 * 179.82948 * 2 1 3 12 12 C 1.50706 * 126.56858 * 0.04465 * 11 2 1 13 13 C 1.50699 * 109.46817 * 269.68207 * 12 11 2 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99835 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00390 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46950 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47074 * 119.99834 * 17 15 13 20 20 H 1.48505 * 109.46997 * 239.99828 * 17 15 13 21 21 H 1.08995 * 109.46894 * 270.16721 * 1 2 3 22 22 H 1.09004 * 109.46848 * 30.16771 * 1 2 3 23 23 H 1.08996 * 109.46860 * 150.16426 * 1 2 3 24 24 H 1.08004 * 119.20564 * 179.97438 * 7 6 5 25 25 H 1.08000 * 120.29644 * 179.97438 * 8 7 6 26 26 H 1.07991 * 120.98226 * 180.02562 * 9 8 7 27 27 H 1.09000 * 109.47318 * 29.67587 * 12 11 2 28 28 H 1.09000 * 109.47161 * 149.68217 * 12 11 2 29 29 H 0.96992 * 120.00038 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2932 1.1209 0.0000 4 1 1.9620 2.0326 -0.0004 5 6 3.6205 0.7648 -0.0054 6 7 4.7481 1.4635 -0.0110 7 6 5.9252 0.8755 -0.0150 8 6 6.0471 -0.5058 -0.0140 9 6 4.9075 -1.2876 -0.0075 10 6 3.6686 -0.6424 -0.0036 11 6 2.2777 -1.0990 0.0033 12 6 1.8023 -2.5291 0.0066 13 6 1.6504 -3.0046 1.4285 14 1 1.8760 -2.3380 2.2478 15 6 1.2244 -4.2908 1.6835 16 7 0.9501 -5.1027 0.6858 17 14 1.0355 -4.8800 3.4461 18 1 1.4037 -3.7831 4.3769 19 1 -0.3742 -5.2808 3.6856 20 1 1.9273 -6.0448 3.6769 21 1 -0.3633 0.0030 1.0276 22 1 -0.3633 0.8885 -0.5165 23 1 -0.3633 -0.8914 -0.5113 24 1 6.8180 1.4833 -0.0199 25 1 7.0239 -0.9666 -0.0177 26 1 4.9729 -2.3656 -0.0061 27 1 0.8407 -2.5935 -0.5026 28 1 2.5298 -3.1550 -0.5101 29 1 0.6508 -6.0076 0.8652 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260035875.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:16 Heat of formation + Delta-G solvation = 34.651676 kcal Electronic energy + Delta-G solvation = -13766.128602 eV Core-core repulsion = 11460.338060 eV Total energy + Delta-G solvation = -2305.790543 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.39815 -38.84559 -35.56261 -33.89580 -32.34884 -31.65511 -29.35423 -27.63013 -25.05549 -23.80152 -22.82664 -19.95512 -18.94391 -18.41791 -17.24554 -16.80404 -16.46528 -16.05271 -15.27351 -14.40521 -14.25049 -14.05228 -14.02403 -13.82217 -13.44603 -13.07376 -12.68217 -12.65069 -12.55859 -12.16220 -11.77797 -11.60947 -11.01713 -10.56681 -10.26857 -9.23456 -8.65934 -8.10365 -6.26176 0.14040 0.51793 1.39842 1.40911 1.53443 1.83629 1.91849 2.44721 3.03666 3.15549 3.70874 3.91319 3.94358 4.20100 4.38124 4.45797 4.54221 4.79524 4.82617 4.99072 5.07080 5.16644 5.37467 5.44717 5.56167 5.70526 5.80383 5.93103 6.17504 6.29170 6.56356 6.85349 7.14748 7.41764 8.94440 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.031128 B = 0.009184 C = 0.007881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.297554 B = 3048.027638 C = 3552.160499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.068 3.932 3 N -0.571 5.571 4 H 0.427 0.573 5 C 0.263 3.737 6 N -0.518 5.518 7 C 0.128 3.872 8 C -0.200 4.200 9 C -0.045 4.045 10 C -0.175 4.175 11 C -0.156 4.156 12 C 0.098 3.902 13 C -0.517 4.517 14 H 0.045 0.955 15 C 0.009 3.991 16 N -0.929 5.929 17 Si 0.958 3.042 18 H -0.271 1.271 19 H -0.274 1.274 20 H -0.278 1.278 21 H 0.079 0.921 22 H 0.096 0.904 23 H 0.075 0.925 24 H 0.200 0.800 25 H 0.169 0.831 26 H 0.124 0.876 27 H 0.013 0.987 28 H -0.006 1.006 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.888 10.948 -1.113 12.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.038 4.038 3 N -0.180 5.180 4 H 0.266 0.734 5 C 0.030 3.970 6 N -0.233 5.233 7 C -0.037 4.037 8 C -0.221 4.221 9 C -0.071 4.071 10 C -0.182 4.182 11 C -0.162 4.162 12 C 0.060 3.940 13 C -0.555 4.555 14 H 0.063 0.937 15 C -0.189 4.189 16 N -0.570 5.570 17 Si 0.783 3.217 18 H -0.195 1.195 19 H -0.199 1.199 20 H -0.204 1.204 21 H 0.098 0.902 22 H 0.114 0.886 23 H 0.093 0.907 24 H 0.217 0.783 25 H 0.187 0.813 26 H 0.142 0.858 27 H 0.031 0.969 28 H 0.012 0.988 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.600 11.803 -1.151 12.720 hybrid contribution -0.258 -1.291 0.734 1.507 sum 4.342 10.513 -0.417 11.382 Atomic orbital electron populations 1.20411 0.85292 1.04066 1.03652 1.20388 0.94576 0.84214 1.04659 1.41259 1.01879 1.08800 1.66058 0.73360 1.18501 0.86397 0.89666 1.02417 1.66541 0.96959 1.41074 1.18695 1.23107 0.93709 0.93054 0.93863 1.22146 0.99363 0.94969 1.05594 1.21253 0.91101 1.00581 0.94204 1.20208 0.95033 0.94362 1.08587 1.20738 0.90799 0.96294 1.08383 1.17357 0.94480 0.86417 0.95729 1.21345 1.44194 0.97383 0.92556 0.93701 1.25806 0.95110 0.96803 1.01195 1.70074 1.46857 1.07302 1.32721 0.85502 0.78061 0.78149 0.79957 1.19512 1.19930 1.20387 0.90222 0.88569 0.90668 0.78324 0.81305 0.85812 0.96903 0.98794 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.35 10.18 71.24 0.73 -1.63 15 2 C 0.07 2.59 7.09 40.85 0.29 2.88 15 3 N -0.57 -19.34 6.05 -180.58 -1.09 -20.43 15 4 H 0.43 11.04 8.96 -92.71 -0.83 10.21 15 5 C 0.26 10.10 8.43 133.93 1.13 11.22 15 6 N -0.52 -17.66 10.39 -192.73 -2.00 -19.66 15 7 C 0.13 3.51 11.14 84.83 0.95 4.46 15 8 C -0.20 -5.69 10.10 22.36 0.23 -5.47 15 9 C -0.04 -1.71 10.22 22.61 0.23 -1.48 15 10 C -0.17 -7.54 6.37 -20.18 -0.13 -7.67 15 11 C -0.16 -7.23 5.51 -18.66 -0.10 -7.33 15 12 C 0.10 5.28 5.27 29.10 0.15 5.44 15 13 C -0.52 -29.67 9.09 25.60 0.23 -29.43 15 14 H 0.04 2.61 7.74 -2.91 -0.02 2.58 15 15 C 0.01 0.50 5.46 84.65 0.46 0.96 15 16 N -0.93 -55.49 13.29 21.45 0.28 -55.20 15 17 Si 0.96 44.39 29.54 68.60 2.03 46.41 15 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 20 H -0.28 -12.56 7.11 99.48 0.71 -11.86 15 21 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 22 H 0.10 2.12 8.14 -2.38 -0.02 2.10 15 23 H 0.07 2.54 7.04 -2.39 -0.02 2.52 15 24 H 0.20 3.46 8.06 -2.91 -0.02 3.44 15 25 H 0.17 3.39 8.06 -2.91 -0.02 3.36 15 26 H 0.12 4.81 8.06 -2.92 -0.02 4.78 15 27 H 0.01 0.71 7.05 -2.39 -0.02 0.70 15 28 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 15 29 H 0.26 14.78 8.31 -92.71 -0.77 14.01 15 Total: -1.00 -69.90 257.14 3.71 -66.19 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.33 Total: 10.73 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 4.16 Total: -28.04 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -2.81 Total: -95.29 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -69.90 3.71 -66.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260035875.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.837 kcal (2) G-P(sol) polarization free energy of solvation -69.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds