Wall clock time and date at job start Mon Mar 30 2020 02:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30469 * 126.06928 * 2 1 4 4 N 1.39867 * 110.10831 * 180.02562 * 3 2 1 5 5 C 1.36999 * 125.49795 * 180.02562 * 4 3 2 6 6 H 1.08002 * 119.99702 * 194.08381 * 5 4 3 7 7 C 1.38928 * 120.00119 * 14.07451 * 5 4 3 8 8 N 1.31378 * 119.99843 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00402 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46874 * 90.00036 * 9 7 5 11 11 H 1.48498 * 109.47363 * 210.00621 * 9 7 5 12 12 H 1.48508 * 109.46534 * 330.00291 * 9 7 5 13 13 C 1.37675 * 109.00816 * 0.02562 * 4 3 2 14 14 C 1.40878 * 106.69890 * 359.97438 * 13 4 3 15 15 C 1.39797 * 119.74694 * 179.97438 * 14 13 4 16 16 C 1.36654 * 119.77610 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.60216 * 359.97438 * 16 15 14 18 18 C 1.37868 * 120.64291 * 0.25290 * 17 16 15 19 19 C 1.50701 * 120.12404 * 179.72441 * 18 17 16 20 20 H 1.08993 * 109.47223 * 269.99976 * 1 2 3 21 21 H 1.08998 * 109.46823 * 30.00369 * 1 2 3 22 22 H 1.09000 * 109.46576 * 149.99982 * 1 2 3 23 23 H 0.96992 * 119.99838 * 179.97438 * 8 7 5 24 24 H 1.08000 * 120.11329 * 179.97438 * 15 14 13 25 25 H 1.07994 * 119.69734 * 179.97438 * 16 15 14 26 26 H 1.08001 * 119.67670 * 179.97438 * 17 16 15 27 27 H 1.08998 * 109.47325 * 96.23487 * 19 18 17 28 28 H 1.09003 * 109.47325 * 216.22823 * 19 18 17 29 29 H 1.08996 * 109.47643 * 336.22605 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2751 1.0546 0.0000 4 7 3.6199 0.6700 -0.0006 5 6 4.6914 1.5236 -0.0003 6 1 5.6790 1.1506 -0.2284 7 6 4.5077 2.8690 0.2933 8 7 3.3064 3.3226 0.5711 9 14 5.9686 4.0331 0.2931 10 1 6.1426 4.6087 -1.0647 11 1 5.7297 5.1276 1.2679 12 1 7.1950 3.2882 0.6759 13 6 3.6931 -0.7048 -0.0016 14 6 2.3671 -1.1808 -0.0010 15 6 2.1243 -2.5575 -0.0023 16 6 3.1746 -3.4318 -0.0036 17 6 4.4821 -2.9657 -0.0041 18 6 4.7457 -1.6125 0.0018 19 6 6.1697 -1.1193 0.0074 20 1 -0.3633 0.0000 1.0276 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3632 -0.8900 -0.5139 23 1 3.1782 4.2619 0.7764 24 1 1.1102 -2.9289 -0.0014 25 1 2.9856 -4.4951 -0.0041 26 1 5.3009 -3.6700 -0.0048 27 1 6.4792 -0.8910 -1.0125 28 1 6.2403 -0.2194 0.6184 29 1 6.8198 -1.8906 0.4203 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260201107.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:55 Heat of formation + Delta-G solvation = 78.673684 kcal Electronic energy + Delta-G solvation = -14113.065515 eV Core-core repulsion = 11809.183910 eV Total energy + Delta-G solvation = -2303.881605 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.94368 -36.23420 -33.98180 -32.22331 -30.55750 -28.45531 -27.88887 -26.07024 -24.01354 -21.20471 -20.83261 -19.01464 -17.19487 -15.95269 -14.97858 -14.54417 -14.28238 -14.01467 -13.40364 -12.69989 -12.61130 -12.38613 -12.04628 -11.83611 -11.68959 -11.52924 -11.27827 -11.06286 -10.66347 -10.57974 -10.16778 -9.93133 -9.29198 -8.96924 -8.56660 -7.38306 -7.01851 -6.57944 -4.12031 2.06175 2.59864 3.04218 3.04518 3.09016 3.78030 3.87577 4.42212 4.70734 5.03903 5.67357 5.67921 5.74706 5.83549 6.04697 6.16841 6.29585 6.31383 6.35163 6.43546 6.54004 6.58908 6.89073 6.95361 7.10626 7.16889 7.45322 7.48910 7.65987 7.97071 8.07262 8.60055 9.28934 9.49422 10.40552 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.030227 B = 0.012120 C = 0.008733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.114593 B = 2309.638187 C = 3205.430927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.019 4.019 3 N -0.203 5.203 4 N -0.178 5.178 5 C -0.323 4.323 6 H 0.124 0.876 7 C 0.043 3.957 8 N -0.788 5.788 9 Si 0.931 3.069 10 H -0.270 1.270 11 H -0.276 1.276 12 H -0.263 1.263 13 C 0.054 3.946 14 C -0.190 4.190 15 C -0.054 4.054 16 C -0.186 4.186 17 C -0.121 4.121 18 C -0.079 4.079 19 C -0.113 4.113 20 H 0.059 0.941 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.274 0.726 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.084 -5.665 -0.553 5.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.184 4.184 3 N -0.026 5.026 4 N 0.052 4.948 5 C -0.454 4.454 6 H 0.141 0.859 7 C -0.171 4.171 8 N -0.416 5.416 9 Si 0.755 3.245 10 H -0.196 1.196 11 H -0.201 1.201 12 H -0.187 1.187 13 C -0.068 4.068 14 C -0.200 4.200 15 C -0.074 4.074 16 C -0.207 4.207 17 C -0.143 4.143 18 C -0.083 4.083 19 C -0.170 4.170 20 H 0.077 0.923 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.125 0.875 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.025 -4.046 -0.486 4.202 hybrid contribution 0.649 -0.252 0.035 0.697 sum 1.674 -4.298 -0.452 4.634 Atomic orbital electron populations 1.19800 0.88121 1.01516 1.01241 1.23256 0.95796 0.89655 1.09672 1.77425 0.86619 1.20482 1.18110 1.44446 1.03597 1.00904 1.45832 1.20064 0.86726 0.89548 1.49070 0.85874 1.25613 0.98107 0.97980 0.95437 1.70172 1.20898 1.15475 1.35044 0.85864 0.80289 0.79556 0.78756 1.19573 1.20096 1.18728 1.18599 0.94696 0.85197 1.08276 1.19434 0.92050 0.93414 1.15094 1.20004 0.97705 0.91069 0.98639 1.20179 0.92709 0.97945 1.09858 1.20422 0.96180 0.93306 1.04359 1.18699 0.93242 0.91884 1.04462 1.20873 0.92777 1.01599 1.01747 0.92253 0.91914 0.92063 0.91570 0.87754 0.87766 0.87451 0.92228 0.90444 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.90 10.48 36.00 0.38 -0.53 15 2 C -0.02 -0.46 7.44 -80.03 -0.60 -1.06 15 3 N -0.20 -5.73 10.30 34.90 0.36 -5.37 15 4 N -0.18 -4.97 3.73 -9.50 -0.04 -5.01 15 5 C -0.32 -8.65 9.30 -14.99 -0.14 -8.79 15 6 H 0.12 3.00 5.12 -52.49 -0.27 2.73 15 7 C 0.04 1.13 5.49 -17.49 -0.10 1.03 15 8 N -0.79 -21.86 11.89 55.49 0.66 -21.20 15 9 Si 0.93 19.18 29.55 -169.99 -5.02 14.16 15 10 H -0.27 -5.50 7.11 56.52 0.40 -5.09 15 11 H -0.28 -5.62 7.11 56.52 0.40 -5.21 15 12 H -0.26 -5.18 7.11 56.52 0.40 -4.77 15 13 C 0.05 1.37 6.75 -83.96 -0.57 0.80 15 14 C -0.19 -4.57 6.33 -105.17 -0.67 -5.23 15 15 C -0.05 -1.09 10.06 -39.57 -0.40 -1.49 15 16 C -0.19 -3.48 9.97 -39.94 -0.40 -3.88 15 17 C -0.12 -2.33 9.65 -39.50 -0.38 -2.72 15 18 C -0.08 -1.73 5.89 -104.48 -0.62 -2.35 15 19 C -0.11 -2.14 8.80 36.01 0.32 -1.82 15 20 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 21 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.27 6.97 8.31 -40.82 -0.34 6.64 15 24 H 0.10 1.79 8.06 -52.49 -0.42 1.37 15 25 H 0.10 1.60 8.06 -52.49 -0.42 1.18 15 26 H 0.11 1.72 8.05 -52.49 -0.42 1.30 15 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 28 H 0.08 1.56 5.87 -51.93 -0.30 1.26 15 29 H 0.05 0.84 8.04 -51.93 -0.42 0.43 15 LS Contribution 251.03 15.07 3.78 3.78 Total: -1.00 -30.82 251.03 -6.50 -37.32 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -3.09 Total: 2.34 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -3.16 Total: -26.03 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.98 Total: -31.58 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.82 -6.50 -37.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260201107.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.997 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds