Wall clock time and date at job start Mon Mar 30 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00134 * 2 1 4 4 C 1.52997 * 109.47264 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47131 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.62649 * 306.06119 * 5 4 3 7 7 O 1.43751 * 109.63295 * 66.45045 * 5 4 3 8 8 C 1.44790 * 104.81372 * 144.19337 * 7 5 4 9 9 C 1.54907 * 101.72186 * 323.89703 * 8 7 5 10 10 H 1.09001 * 110.69787 * 277.16493 * 9 8 7 11 11 C 1.53002 * 110.69337 * 154.13216 * 9 8 7 12 12 C 1.50703 * 109.46942 * 175.00046 * 11 9 8 13 13 H 1.08000 * 120.00003 * 359.97438 * 12 11 9 14 14 C 1.37878 * 119.99854 * 179.97438 * 12 11 9 15 15 N 1.31510 * 120.00323 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99791 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47038 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47168 * 119.99953 * 16 14 12 19 19 H 1.48496 * 109.46946 * 239.99778 * 16 14 12 20 20 O 1.43370 * 109.63251 * 185.81909 * 5 4 3 21 21 H 1.09002 * 109.46796 * 60.00253 * 1 2 3 22 22 H 1.08994 * 109.46829 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47036 * 300.00109 * 1 2 3 24 24 H 1.09001 * 109.47103 * 300.00246 * 3 2 1 25 25 H 1.09004 * 109.47054 * 59.99750 * 3 2 1 26 26 H 1.09001 * 109.46832 * 299.99892 * 4 3 2 27 27 H 1.08992 * 109.47303 * 59.99596 * 4 3 2 28 28 H 1.09000 * 110.97788 * 82.00675 * 8 7 5 29 29 H 1.09003 * 110.97481 * 205.78466 * 8 7 5 30 30 H 1.09006 * 109.47060 * 294.99708 * 11 9 8 31 31 H 1.08992 * 109.47405 * 55.00478 * 11 9 8 32 32 H 0.96997 * 120.00147 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5824 0.0013 6 1 3.7549 3.1629 -0.8287 7 8 3.8595 3.2433 1.2425 8 6 5.0426 4.0230 1.5404 9 6 6.1700 3.0924 1.0279 10 1 6.4198 2.3411 1.7772 11 6 7.4090 3.9043 0.6451 12 6 8.5272 2.9668 0.2682 13 1 8.3699 1.8988 0.2990 14 6 9.7509 3.4727 -0.1161 15 7 9.9423 4.7732 -0.1542 16 14 11.1367 2.3106 -0.5840 17 1 10.6688 0.9068 -0.4594 18 1 11.5501 2.5725 -1.9861 19 1 12.2928 2.5289 0.3219 20 8 5.5810 2.4761 -0.1350 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.6886 1.8464 -0.8900 25 1 1.6886 1.8464 0.8900 26 1 3.8567 0.6439 0.8909 27 1 3.8575 0.6436 -0.8890 28 1 5.0364 4.9660 0.9938 29 1 5.1363 4.1958 2.6126 30 1 7.1738 4.5485 -0.2022 31 1 7.7183 4.5165 1.4922 32 1 10.8031 5.1291 -0.4248 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260215140.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:31 Heat of formation + Delta-G solvation = -171.250603 kcal Electronic energy + Delta-G solvation = -14664.818505 eV Core-core repulsion = 12010.497699 eV Total energy + Delta-G solvation = -2654.320806 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 216.119 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.36917 -38.85154 -36.22813 -35.29015 -33.94580 -31.91719 -28.60127 -27.51129 -25.29558 -25.10390 -22.67587 -22.30349 -18.61957 -18.18454 -17.81064 -17.39073 -16.91543 -16.46243 -16.30024 -15.77198 -15.15071 -14.77186 -14.18943 -14.12333 -13.87791 -13.64235 -13.18947 -13.13152 -12.71875 -12.48965 -12.40452 -12.28011 -12.09061 -11.68587 -11.21948 -11.04489 -10.63854 -10.60427 -10.49727 -8.22024 -6.30885 1.39595 1.40676 1.53998 2.40813 2.43794 2.65370 3.11454 3.32809 3.73582 3.87606 3.98518 4.09647 4.15497 4.30482 4.35289 4.50645 4.54074 4.57151 4.63006 4.74562 4.85010 4.93671 4.99914 5.15819 5.33026 5.54039 5.74773 6.13349 6.19568 6.26584 6.80808 7.37015 8.89889 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.050631 B = 0.005797 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.891488 B = 4828.945021 C = 5253.896133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.074 3.926 4 C -0.125 4.125 5 C 0.228 3.772 6 H 0.092 0.908 7 O -0.387 6.387 8 C 0.027 3.973 9 C 0.063 3.937 10 H 0.072 0.928 11 C 0.028 3.972 12 C -0.535 4.535 13 H 0.052 0.948 14 C 0.004 3.996 15 N -0.930 5.930 16 Si 0.962 3.038 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.274 1.274 20 O -0.395 6.395 21 H 0.053 0.947 22 H 0.099 0.901 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.002 0.998 31 H 0.026 0.974 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.987 -4.691 1.488 16.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.003 4.003 4 C -0.163 4.163 5 C 0.133 3.867 6 H 0.109 0.891 7 O -0.308 6.308 8 C -0.049 4.049 9 C 0.007 3.993 10 H 0.089 0.911 11 C -0.009 4.009 12 C -0.573 4.573 13 H 0.070 0.930 14 C -0.194 4.194 15 N -0.570 5.570 16 Si 0.787 3.213 17 H -0.192 1.192 18 H -0.204 1.204 19 H -0.199 1.199 20 O -0.316 6.316 21 H 0.071 0.929 22 H 0.117 0.883 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.148 0.852 30 H 0.021 0.979 31 H 0.045 0.955 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.853 -4.846 1.403 16.636 hybrid contribution 0.834 0.002 -0.303 0.888 sum -15.018 -4.844 1.100 15.819 Atomic orbital electron populations 1.22952 0.79153 1.03959 1.01017 1.87823 1.21849 1.28453 1.95660 1.22303 0.91932 0.84590 1.01445 1.21824 0.94838 0.95509 1.04164 1.24052 0.81772 0.93319 0.87566 0.89075 1.89101 1.38177 1.62873 1.40668 1.24545 0.81551 0.94759 1.04009 1.23881 0.94601 0.94350 0.86504 0.91054 1.19112 0.90977 0.94567 0.96290 1.21515 0.97226 0.93364 1.45163 0.92964 1.25862 1.01355 0.96756 0.95408 1.70056 1.24982 1.12874 1.49138 0.85433 0.78747 0.79098 0.77988 1.19232 1.20412 1.19913 1.88971 1.18080 1.80830 1.43742 0.92879 0.88303 0.93196 0.91657 0.92304 0.91323 0.89454 0.90232 0.85180 0.97927 0.95538 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -10.50 10.70 -148.98 -1.59 -12.10 16 3 C 0.07 1.79 5.85 71.98 0.42 2.21 16 4 C -0.13 -3.69 5.67 30.59 0.17 -3.52 16 5 C 0.23 7.59 4.00 71.98 0.29 7.88 16 6 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 7 O -0.39 -12.60 10.96 -126.22 -1.38 -13.99 16 8 C 0.03 0.90 7.40 72.63 0.54 1.44 16 9 C 0.06 2.68 3.57 31.25 0.11 2.79 16 10 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 11 C 0.03 1.43 4.73 29.85 0.14 1.57 16 12 C -0.53 -30.87 9.04 25.60 0.23 -30.64 16 13 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 14 C 0.00 0.24 5.46 84.66 0.46 0.70 16 15 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 16 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 O -0.39 -17.00 10.86 -126.22 -1.37 -18.37 16 21 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.40 7.87 -2.38 -0.02 1.38 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.09 2.57 8.14 -2.39 -0.02 2.56 16 28 H 0.08 2.55 8.05 -2.39 -0.02 2.54 16 29 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 30 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 31 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -66.19 274.93 2.65 -63.54 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.08 Total: 5.45 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 3.61 Total: -15.90 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.28 Total: -55.56 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -4.35 Total: -44.46 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -66.19 2.65 -63.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260215140.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.715 kcal (2) G-P(sol) polarization free energy of solvation -66.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds