Wall clock time and date at job start Mon Mar 30 2020 02:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35110 * 125.68473 * 2 1 4 4 N 1.36836 * 107.17548 * 179.97438 * 3 2 1 5 5 C 1.36483 * 132.56490 * 179.97438 * 4 3 2 6 6 C 1.34957 * 120.60996 * 180.02562 * 5 4 3 7 7 C 1.40475 * 120.29492 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.14882 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47000 * 270.01984 * 8 7 6 10 10 H 1.08003 * 120.00321 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99771 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99804 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00356 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46870 * 90.00168 * 13 11 9 15 15 H 1.48493 * 109.47599 * 210.00220 * 13 11 9 16 16 H 1.48504 * 109.47110 * 330.00379 * 13 11 9 17 17 C 1.36014 * 119.69628 * 0.02562 * 7 6 5 18 18 C 1.37079 * 107.00257 * 0.02562 * 4 3 2 19 19 N 1.32557 * 108.03228 * 359.75417 * 18 4 3 20 20 H 1.09002 * 109.47152 * 90.00177 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.00278 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.00259 * 1 2 3 23 23 H 1.07994 * 126.41200 * 359.93479 * 3 2 1 24 24 H 1.08000 * 119.69749 * 0.02562 * 5 4 3 25 25 H 1.07992 * 119.85350 * 179.97438 * 6 5 4 26 26 H 1.09008 * 109.47040 * 30.01959 * 8 7 6 27 27 H 1.08999 * 109.46944 * 150.01696 * 8 7 6 28 28 H 0.96998 * 119.99974 * 180.02562 * 12 11 9 29 29 H 1.08009 * 120.33489 * 180.02562 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2952 1.0974 0.0000 4 7 3.5927 0.6630 0.0006 5 6 4.7873 1.3232 0.0004 6 6 5.9506 0.6389 0.0006 7 6 5.9464 -0.7658 0.0016 8 6 7.2473 -1.5266 0.0012 9 6 7.6802 -1.7807 -1.4197 10 1 7.0742 -1.4263 -2.2405 11 6 8.8500 -2.4655 -1.6719 12 7 9.2281 -2.6868 -2.9120 13 14 9.8986 -3.0778 -0.2525 14 1 9.4693 -4.4484 0.1248 15 1 11.3249 -3.1018 -0.6650 16 1 9.7351 -2.1699 0.9113 17 6 4.7629 -1.4361 0.0017 18 6 3.5567 -0.7073 0.0003 19 7 2.2859 -1.0843 0.0050 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5139 23 1 1.9632 2.1251 -0.0010 24 1 4.8018 2.4031 0.0001 25 1 6.8888 1.1737 0.0000 26 1 8.0106 -0.9415 0.5145 27 1 7.1120 -2.4780 0.5155 28 1 10.0508 -3.1690 -3.0895 29 1 4.7477 -2.5161 0.0029 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260419843.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:56 Heat of formation + Delta-G solvation = 76.301861 kcal Electronic energy + Delta-G solvation = -13492.721663 eV Core-core repulsion = 11188.737208 eV Total energy + Delta-G solvation = -2303.984455 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.37894 -37.44249 -34.14315 -32.52167 -31.48846 -29.70388 -28.43876 -26.31970 -23.24916 -22.65535 -20.95449 -19.82176 -17.40778 -16.87880 -16.18021 -15.55577 -14.90903 -14.28361 -14.15932 -13.61572 -13.13260 -12.85896 -12.67209 -12.32015 -11.91745 -11.89544 -11.33437 -11.08112 -10.74493 -10.56753 -10.20826 -9.77299 -9.70387 -9.37423 -8.66010 -8.28406 -7.28630 -6.14838 -4.15794 1.25204 1.75534 2.99294 3.15019 3.24427 3.32524 3.33234 4.04592 4.34525 4.55481 4.74281 5.00903 5.17905 5.34844 5.42115 5.56559 5.67330 5.71325 5.77909 5.93203 6.15739 6.37650 6.51742 6.64912 6.84263 6.95142 7.04383 7.29111 7.47754 7.57634 8.27323 8.39061 8.89112 9.43961 10.97827 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.057591 B = 0.006566 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.073153 B = 4263.531190 C = 4387.382928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.051 3.949 3 C -0.124 4.124 4 N -0.362 5.362 5 C 0.033 3.967 6 C -0.117 4.117 7 C -0.012 4.012 8 C 0.018 3.982 9 C -0.519 4.519 10 H 0.074 0.926 11 C 0.071 3.929 12 N -0.896 5.896 13 Si 0.878 3.122 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.264 1.264 17 C -0.106 4.106 18 C 0.245 3.755 19 N -0.509 5.509 20 H 0.070 0.930 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.173 0.827 24 H 0.157 0.843 25 H 0.150 0.850 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.266 0.734 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.230 8.417 7.456 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.083 4.083 3 C -0.254 4.254 4 N -0.034 5.034 5 C -0.089 4.089 6 C -0.138 4.138 7 C -0.018 4.018 8 C -0.019 4.019 9 C -0.556 4.556 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.534 5.534 13 Si 0.705 3.295 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.189 1.189 17 C -0.126 4.126 18 C 0.002 3.998 19 N -0.231 5.231 20 H 0.088 0.912 21 H 0.087 0.913 22 H 0.090 0.910 23 H 0.190 0.810 24 H 0.174 0.826 25 H 0.168 0.832 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.413 7.606 7.346 14.841 hybrid contribution 0.985 0.596 0.446 1.234 sum -9.428 8.202 7.793 14.727 Atomic orbital electron populations 1.20065 0.87512 1.02603 1.02323 1.20807 0.96505 0.88397 1.02557 1.22153 0.81099 1.00489 1.21685 1.42743 1.05798 1.08969 1.45845 1.21487 0.83090 0.98277 1.06001 1.20926 0.97059 0.94791 1.01005 1.20173 0.96628 0.92975 0.92011 1.18811 0.89080 0.94971 0.99035 1.20870 1.07716 1.36947 0.90117 0.90759 1.24987 0.97234 0.95277 0.95585 1.69894 1.23760 1.41001 1.18772 0.86799 0.79774 0.79894 0.83015 1.19999 1.21181 1.18873 1.20107 0.87001 1.00603 1.04923 1.21034 0.94319 0.80255 1.04237 1.70625 0.98359 1.29038 1.25036 0.91173 0.91317 0.91027 0.80963 0.82566 0.83197 0.94816 0.95163 0.92441 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.42 36.01 0.38 -0.39 15 2 C 0.05 0.81 7.06 -82.97 -0.59 0.23 15 3 C -0.12 -1.85 11.66 -16.43 -0.19 -2.04 15 4 N -0.36 -6.23 2.94 -62.66 -0.18 -6.41 15 5 C 0.03 0.50 10.95 -16.65 -0.18 0.32 15 6 C -0.12 -1.97 9.67 -39.90 -0.39 -2.36 15 7 C -0.01 -0.24 5.07 -104.58 -0.53 -0.77 15 8 C 0.02 0.41 4.18 -29.03 -0.12 0.29 15 9 C -0.52 -14.16 9.65 -34.44 -0.33 -14.50 15 10 H 0.07 2.24 7.98 -52.48 -0.42 1.82 15 11 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 12 N -0.90 -26.86 13.96 55.43 0.77 -26.09 15 13 Si 0.88 20.61 27.47 -169.99 -4.67 15.94 15 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 16 H -0.26 -5.84 6.54 56.52 0.37 -5.47 15 17 C -0.11 -2.14 9.75 -39.36 -0.38 -2.52 15 18 C 0.24 4.85 7.81 -156.04 -1.22 3.63 15 19 N -0.51 -10.03 11.32 -9.00 -0.10 -10.13 15 20 H 0.07 0.72 8.14 -51.93 -0.42 0.30 15 21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.07 0.81 8.14 -51.93 -0.42 0.38 15 23 H 0.17 1.88 8.06 -52.49 -0.42 1.46 15 24 H 0.16 1.68 8.06 -52.49 -0.42 1.26 15 25 H 0.15 2.19 8.06 -52.49 -0.42 1.77 15 26 H 0.03 0.73 7.15 -51.92 -0.37 0.36 15 27 H 0.03 0.67 7.51 -51.93 -0.39 0.28 15 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 15 29 H 0.15 2.90 8.06 -52.48 -0.42 2.48 15 LS Contribution 255.74 15.07 3.85 3.85 Total: -1.00 -32.11 255.74 -7.29 -39.40 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -3.31 Total: -0.35 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -3.65 Total: -16.20 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.49 Total: -42.63 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.11 -7.29 -39.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260419843.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.699 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds