Wall clock time and date at job start Mon Mar 30 2020 02:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.63308 * 2 1 4 4 C 1.53002 * 109.47023 * 58.93544 * 3 2 1 5 5 O 1.42902 * 109.47157 * 180.02562 * 4 3 2 6 6 O 1.43756 * 109.63249 * 120.39132 * 2 1 3 7 7 C 1.44784 * 104.81661 * 95.41180 * 6 2 1 8 8 C 1.54917 * 101.71766 * 36.10658 * 7 6 2 9 9 H 1.09002 * 110.69655 * 82.83695 * 8 7 6 10 10 C 1.52999 * 110.69403 * 206.04021 * 8 7 6 11 11 C 1.50699 * 109.47325 * 184.99879 * 10 8 7 12 12 H 1.08007 * 119.99956 * 0.02562 * 11 10 8 13 13 C 1.37880 * 120.00425 * 180.02562 * 11 10 8 14 14 N 1.31517 * 119.99596 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00068 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47142 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47087 * 119.99837 * 15 13 11 18 18 H 1.48495 * 109.46797 * 239.99594 * 15 13 11 19 19 O 1.43362 * 109.50941 * 239.67787 * 2 1 3 20 20 H 1.09002 * 109.46738 * 300.30889 * 1 2 3 21 21 H 1.08998 * 109.46784 * 60.30489 * 1 2 3 22 22 H 1.08996 * 109.47334 * 180.30998 * 1 2 3 23 23 H 1.08988 * 109.47268 * 178.93816 * 3 2 1 24 24 H 1.08999 * 109.46564 * 298.94202 * 3 2 1 25 25 H 1.08998 * 109.47378 * 300.00787 * 4 3 2 26 26 H 1.08997 * 109.46760 * 60.00353 * 4 3 2 27 27 H 0.96693 * 114.00090 * 179.97438 * 5 4 3 28 28 H 1.09000 * 110.98194 * 277.99829 * 7 6 2 29 29 H 1.09005 * 111.01175 * 154.22730 * 7 6 2 30 30 H 1.09002 * 109.47514 * 304.99964 * 10 8 7 31 31 H 1.09004 * 109.47483 * 64.99901 * 10 8 7 32 32 H 0.97004 * 119.99291 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0441 1.4410 0.0000 4 6 1.5144 2.1715 1.2356 5 8 1.9940 3.5176 1.2354 6 8 2.0130 -0.6850 1.1679 7 6 2.2618 -2.0410 0.7255 8 6 2.7837 -1.8112 -0.7148 9 1 3.8467 -1.5699 -0.7055 10 6 2.5138 -3.0370 -1.5897 11 6 3.1391 -2.8340 -2.9457 12 1 3.6758 -1.9219 -3.1618 13 6 3.0261 -3.8124 -3.9106 14 7 2.3730 -4.9232 -3.6473 15 14 3.8019 -3.5609 -5.5912 16 1 4.4762 -2.2384 -5.6323 17 1 4.7992 -4.6324 -5.8414 18 1 2.7476 -3.6123 -6.6356 19 8 2.0088 -0.6822 -1.1665 20 1 -0.3633 0.5186 0.8872 21 1 -0.3633 0.5091 -0.8927 22 1 -0.3634 -1.0276 0.0056 23 1 3.1338 1.4381 0.0190 24 1 1.6977 1.9503 -0.8993 25 1 0.4246 2.1744 1.2167 26 1 1.8607 1.6622 2.1350 27 1 1.6965 4.0413 1.9918 28 1 1.3410 -2.6243 0.7185 29 1 3.0206 -2.5208 1.3437 30 1 2.9448 -3.9210 -1.1196 31 1 1.4382 -3.1734 -1.7024 32 1 2.2939 -5.6117 -4.3260 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260493749.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:56 Heat of formation + Delta-G solvation = -154.370009 kcal Electronic energy + Delta-G solvation = -15123.541684 eV Core-core repulsion = 12469.952876 eV Total energy + Delta-G solvation = -2653.588809 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 216.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.14280 -36.99402 -34.63361 -33.69165 -32.59683 -30.05443 -28.19006 -26.55221 -23.68615 -23.23772 -20.61854 -20.15990 -17.61004 -16.82243 -16.19435 -15.67369 -15.48780 -14.71530 -14.24823 -13.88500 -13.57601 -13.38582 -12.62838 -12.37669 -12.03943 -11.98130 -11.82199 -11.50403 -11.29365 -11.13632 -10.99686 -10.56033 -10.46931 -9.94557 -9.69767 -9.59620 -9.12566 -8.90201 -8.40406 -6.02856 -4.03778 3.32108 3.39494 3.45390 3.84829 4.03975 4.45699 4.67625 4.97475 5.16794 5.24627 5.31996 5.35099 5.42148 5.56467 5.57248 5.75034 5.80773 6.00368 6.02624 6.15155 6.27782 6.41340 6.43833 6.74702 7.37914 7.55095 7.58309 7.83407 7.94780 8.35127 9.00555 9.59734 11.08801 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.045554 B = 0.006964 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.503517 B = 4019.770464 C = 4327.553143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.254 3.746 3 C -0.120 4.120 4 C 0.080 3.920 5 O -0.576 6.576 6 O -0.385 6.385 7 C 0.017 3.983 8 C 0.062 3.938 9 H 0.073 0.927 10 C 0.023 3.977 11 C -0.511 4.511 12 H 0.059 0.941 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 O -0.358 6.358 20 H 0.067 0.933 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.377 0.623 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.034 0.966 31 H 0.028 0.972 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 9.909 10.227 14.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.176 3.824 3 C -0.158 4.158 4 C 0.002 3.998 5 O -0.382 6.382 6 O -0.306 6.306 7 C -0.060 4.060 8 C 0.006 3.994 9 H 0.091 0.909 10 C -0.014 4.014 11 C -0.549 4.549 12 H 0.077 0.923 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 O -0.279 6.279 20 H 0.086 0.914 21 H 0.092 0.908 22 H 0.084 0.916 23 H 0.097 0.903 24 H 0.104 0.896 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.223 0.777 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.724 9.688 9.584 13.897 hybrid contribution 0.068 0.002 -0.418 0.424 sum -2.655 9.690 9.165 13.600 Atomic orbital electron populations 1.22429 0.94617 1.03412 1.02472 1.23091 0.92551 0.90248 0.76518 1.21759 1.02646 0.92926 0.98456 1.22179 0.97213 0.82020 0.98363 1.86469 1.76903 1.24129 1.50665 1.89109 1.86168 1.22757 1.32584 1.24562 1.01288 0.83754 0.96356 1.24112 0.94943 0.88390 0.92002 0.90918 1.19272 0.98360 0.89477 0.94248 1.21161 1.33890 1.02781 0.97115 0.92285 1.25000 0.95444 0.95173 0.98876 1.69964 1.42167 1.07261 1.34376 0.86486 0.79040 0.78170 0.84057 1.19660 1.21039 1.20989 1.89026 1.69897 1.41950 1.27057 0.91393 0.90830 0.91552 0.90321 0.89569 0.93371 0.92843 0.77691 0.90909 0.88089 0.94787 0.95409 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 8.82 37.16 0.33 -2.23 16 2 C 0.25 4.40 1.14 -26.73 -0.03 4.37 16 3 C -0.12 -1.87 5.25 -26.73 -0.14 -2.01 16 4 C 0.08 1.01 6.54 37.16 0.24 1.25 16 5 O -0.58 -7.04 13.66 -35.23 -0.48 -7.52 16 6 O -0.39 -6.66 10.40 -59.04 -0.61 -7.27 16 7 C 0.02 0.29 7.36 38.17 0.28 0.57 16 8 C 0.06 1.33 3.58 -25.72 -0.09 1.24 16 9 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 10 C 0.02 0.60 4.73 -27.88 -0.13 0.46 16 11 C -0.51 -14.59 9.04 -34.44 -0.31 -14.90 16 12 H 0.06 1.69 7.74 -52.48 -0.41 1.28 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 15 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 O -0.36 -7.77 10.49 -59.04 -0.62 -8.38 16 20 H 0.07 0.83 6.41 -51.93 -0.33 0.50 16 21 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.08 1.31 8.14 -51.94 -0.42 0.89 16 24 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 25 H 0.05 0.53 6.41 -51.93 -0.33 0.20 16 26 H 0.05 0.67 7.73 -51.93 -0.40 0.27 16 27 H 0.38 2.62 9.12 45.56 0.42 3.03 16 28 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 29 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 269.51 15.07 4.06 4.06 Total: -1.00 -32.11 269.51 -5.88 -38.00 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -3.99 Total: -0.01 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 0.05 Total: -9.75 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.74 Total: -26.05 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -1.71 Total: -23.18 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.11 -5.88 -38.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260493749.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.374 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds