Wall clock time and date at job start Mon Mar 30 2020 02:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.63308 * 2 1 4 4 C 1.53002 * 109.47023 * 58.93544 * 3 2 1 5 5 O 1.42902 * 109.47157 * 180.02562 * 4 3 2 6 6 O 1.43756 * 109.63249 * 120.39132 * 2 1 3 7 7 C 1.44784 * 104.81661 * 95.41180 * 6 2 1 8 8 C 1.54917 * 101.71766 * 36.10658 * 7 6 2 9 9 H 1.09002 * 110.69655 * 82.83695 * 8 7 6 10 10 C 1.52999 * 110.69403 * 206.04021 * 8 7 6 11 11 C 1.50699 * 109.47325 * 184.99879 * 10 8 7 12 12 H 1.08007 * 119.99956 * 0.02562 * 11 10 8 13 13 C 1.37880 * 120.00425 * 180.02562 * 11 10 8 14 14 N 1.31517 * 119.99596 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00068 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47142 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47087 * 119.99837 * 15 13 11 18 18 H 1.48495 * 109.46797 * 239.99594 * 15 13 11 19 19 O 1.43362 * 109.50941 * 239.67787 * 2 1 3 20 20 H 1.09002 * 109.46738 * 300.30889 * 1 2 3 21 21 H 1.08998 * 109.46784 * 60.30489 * 1 2 3 22 22 H 1.08996 * 109.47334 * 180.30998 * 1 2 3 23 23 H 1.08988 * 109.47268 * 178.93816 * 3 2 1 24 24 H 1.08999 * 109.46564 * 298.94202 * 3 2 1 25 25 H 1.08998 * 109.47378 * 300.00787 * 4 3 2 26 26 H 1.08997 * 109.46760 * 60.00353 * 4 3 2 27 27 H 0.96693 * 114.00090 * 179.97438 * 5 4 3 28 28 H 1.09000 * 110.98194 * 277.99829 * 7 6 2 29 29 H 1.09005 * 111.01175 * 154.22730 * 7 6 2 30 30 H 1.09002 * 109.47514 * 304.99964 * 10 8 7 31 31 H 1.09004 * 109.47483 * 64.99901 * 10 8 7 32 32 H 0.97004 * 119.99291 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0441 1.4410 0.0000 4 6 1.5144 2.1715 1.2356 5 8 1.9940 3.5176 1.2354 6 8 2.0130 -0.6850 1.1679 7 6 2.2618 -2.0410 0.7255 8 6 2.7837 -1.8112 -0.7148 9 1 3.8467 -1.5699 -0.7055 10 6 2.5138 -3.0370 -1.5897 11 6 3.1391 -2.8340 -2.9457 12 1 3.6758 -1.9219 -3.1618 13 6 3.0261 -3.8124 -3.9106 14 7 2.3730 -4.9232 -3.6473 15 14 3.8019 -3.5609 -5.5912 16 1 4.4762 -2.2384 -5.6323 17 1 4.7992 -4.6324 -5.8414 18 1 2.7476 -3.6123 -6.6356 19 8 2.0088 -0.6822 -1.1665 20 1 -0.3633 0.5186 0.8872 21 1 -0.3633 0.5091 -0.8927 22 1 -0.3634 -1.0276 0.0056 23 1 3.1338 1.4381 0.0190 24 1 1.6977 1.9503 -0.8993 25 1 0.4246 2.1744 1.2167 26 1 1.8607 1.6622 2.1350 27 1 1.6965 4.0413 1.9918 28 1 1.3410 -2.6243 0.7185 29 1 3.0206 -2.5208 1.3437 30 1 2.9448 -3.9210 -1.1196 31 1 1.4382 -3.1734 -1.7024 32 1 2.2939 -5.6117 -4.3260 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260493749.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:55 Heat of formation + Delta-G solvation = -178.657808 kcal Electronic energy + Delta-G solvation = -15124.594882 eV Core-core repulsion = 12469.952876 eV Total energy + Delta-G solvation = -2654.642007 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 216.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.59890 -37.99030 -36.23730 -35.36637 -34.29665 -31.82077 -29.38692 -28.34241 -25.14529 -24.82070 -22.39854 -21.47290 -18.68910 -18.54518 -18.08053 -17.09549 -16.71813 -16.48805 -15.67052 -15.23584 -15.03599 -14.76134 -14.22836 -13.84124 -13.71156 -13.54889 -13.20840 -13.10223 -12.88035 -12.73810 -12.48857 -12.33247 -12.09253 -11.68062 -11.21375 -10.99987 -10.83815 -10.61194 -10.50638 -8.23037 -6.31821 1.38358 1.39321 1.52699 2.39769 2.45970 2.83662 3.11528 3.49590 3.74479 3.78736 3.96238 4.08492 4.17136 4.33757 4.35115 4.49100 4.55086 4.69818 4.74349 4.85444 4.90084 5.05561 5.07157 5.24467 5.32529 5.54419 5.73731 6.15836 6.29208 6.79633 6.91154 7.35947 8.88897 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.045554 B = 0.006964 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.503517 B = 4019.770464 C = 4327.553143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.244 3.756 3 C -0.120 4.120 4 C 0.089 3.911 5 O -0.593 6.593 6 O -0.380 6.380 7 C 0.027 3.973 8 C 0.063 3.937 9 H 0.069 0.931 10 C 0.030 3.970 11 C -0.534 4.534 12 H 0.051 0.949 13 C 0.004 3.996 14 N -0.930 5.930 15 Si 0.962 3.038 16 H -0.269 1.269 17 H -0.273 1.273 18 H -0.278 1.278 19 O -0.390 6.390 20 H 0.099 0.901 21 H 0.076 0.924 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.400 0.600 28 H 0.077 0.923 29 H 0.129 0.871 30 H 0.025 0.975 31 H 0.002 0.998 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 10.915 10.819 15.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.167 3.833 3 C -0.158 4.158 4 C 0.011 3.989 5 O -0.402 6.402 6 O -0.301 6.301 7 C -0.049 4.049 8 C 0.006 3.994 9 H 0.087 0.913 10 C -0.007 4.007 11 C -0.572 4.572 12 H 0.069 0.931 13 C -0.194 4.194 14 N -0.570 5.570 15 Si 0.787 3.213 16 H -0.193 1.193 17 H -0.199 1.199 18 H -0.203 1.203 19 O -0.312 6.312 20 H 0.118 0.882 21 H 0.095 0.905 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.101 0.899 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.251 0.749 28 H 0.095 0.905 29 H 0.147 0.853 30 H 0.043 0.957 31 H 0.020 0.980 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.885 10.717 10.206 15.077 hybrid contribution 0.099 -0.267 -0.578 0.645 sum -2.785 10.450 9.627 14.479 Atomic orbital electron populations 1.22438 0.92626 1.03340 1.04212 1.23449 0.94000 0.90569 0.75242 1.21739 1.01633 0.92299 1.00158 1.22037 0.98200 0.82104 0.96544 1.86408 1.77369 1.24049 1.52417 1.89104 1.86265 1.22474 1.32284 1.24507 1.02141 0.84148 0.94154 1.23863 0.95010 0.86968 0.93552 0.91291 1.19085 0.96164 0.91334 0.94112 1.21497 1.34233 1.02608 0.98840 0.93098 1.25861 0.95852 0.94822 1.02837 1.70064 1.43121 1.08026 1.35811 0.85438 0.78352 0.78361 0.79150 1.19312 1.19852 1.20343 1.88978 1.70145 1.42277 1.29752 0.88206 0.90509 0.92573 0.92058 0.89905 0.91196 0.92564 0.74928 0.90493 0.85315 0.95718 0.97997 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.73 8.82 71.98 0.63 -4.10 16 2 C 0.24 8.22 1.14 30.59 0.03 8.26 16 3 C -0.12 -3.62 5.25 30.59 0.16 -3.46 16 4 C 0.09 2.01 6.54 71.98 0.47 2.48 16 5 O -0.59 -13.01 13.66 -148.98 -2.04 -15.05 16 6 O -0.38 -12.48 10.40 -126.22 -1.31 -13.80 16 7 C 0.03 0.90 7.36 72.64 0.53 1.43 16 8 C 0.06 2.71 3.58 31.25 0.11 2.82 16 9 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 10 C 0.03 1.58 4.73 29.85 0.14 1.72 16 11 C -0.53 -31.05 9.04 25.60 0.23 -30.82 16 12 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 13 C 0.00 0.24 5.46 84.65 0.46 0.71 16 14 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 15 Si 0.96 45.17 29.54 68.60 2.03 47.19 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 O -0.39 -17.04 10.49 -126.22 -1.32 -18.37 16 20 H 0.10 2.13 6.41 -2.39 -0.02 2.11 16 21 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 22 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.07 1.28 6.41 -2.39 -0.02 1.27 16 26 H 0.06 1.25 7.73 -2.39 -0.02 1.23 16 27 H 0.40 4.36 9.12 -74.06 -0.68 3.69 16 28 H 0.08 2.54 8.04 -2.39 -0.02 2.52 16 29 H 0.13 3.61 8.14 -2.38 -0.02 3.59 16 30 H 0.02 1.31 8.14 -2.39 -0.02 1.30 16 31 H 0.00 0.09 8.14 -2.39 -0.02 0.08 16 32 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -68.75 269.51 0.85 -67.90 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.43 Total: 8.87 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 2.78 Total: -20.97 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.28 Total: -55.78 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -4.67 Total: -47.21 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -68.75 0.85 -67.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260493749.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.762 kcal (2) G-P(sol) polarization free energy of solvation -68.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds