Wall clock time and date at job start Mon Mar 30 2020 02:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99760 * 2 1 4 4 H 1.48503 * 109.46708 * 270.00183 * 3 2 1 5 5 H 1.48495 * 109.47073 * 30.00099 * 3 2 1 6 6 H 1.48492 * 109.46924 * 150.00236 * 3 2 1 7 7 C 1.37878 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99928 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46976 * 180.02562 * 9 7 2 11 11 C 1.53784 * 113.61270 * 272.49523 * 10 9 7 12 12 C 1.53779 * 87.08045 * 220.02125 * 11 10 9 13 13 C 1.50701 * 113.61419 * 139.98099 * 12 11 10 14 14 C 1.38234 * 120.00002 * 322.22992 * 13 12 11 15 15 C 1.38233 * 119.99612 * 179.78712 * 14 13 12 16 16 C 1.38238 * 120.00347 * 0.44204 * 15 14 13 17 17 C 1.38238 * 119.99651 * 359.80981 * 16 15 14 18 18 C 1.38226 * 120.00194 * 359.97438 * 17 16 15 19 19 C 1.53779 * 87.08402 * 25.43458 * 12 11 10 20 20 H 0.97006 * 120.00470 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46935 * 59.99907 * 9 7 2 22 22 H 1.09003 * 109.46788 * 300.00005 * 9 7 2 23 23 H 1.08994 * 112.91116 * 43.74893 * 10 9 7 24 24 H 1.09002 * 113.61478 * 334.57090 * 11 10 9 25 25 H 1.09004 * 113.61162 * 105.47268 * 11 10 9 26 26 H 1.09006 * 113.61307 * 270.88660 * 12 11 10 27 27 H 1.07994 * 120.00144 * 359.97438 * 14 13 12 28 28 H 1.08000 * 119.99743 * 180.27350 * 15 14 13 29 29 H 1.07998 * 119.99744 * 179.83639 * 16 15 14 30 30 H 1.08000 * 119.99447 * 180.02562 * 17 16 15 31 31 H 1.08003 * 120.00121 * 180.02562 * 18 17 16 32 32 H 1.08997 * 113.61646 * 220.02209 * 19 12 11 33 33 H 1.08998 * 113.69354 * 89.12517 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 2.6923 -4.0903 -1.4083 12 6 2.6044 -5.5421 -0.9089 13 6 2.0258 -6.4952 -1.9228 14 6 0.9880 -6.0884 -2.7403 15 6 0.4602 -6.9612 -3.6733 16 6 0.9641 -8.2439 -3.7825 17 6 1.9984 -8.6523 -2.9613 18 6 2.5292 -7.7781 -2.0314 19 6 1.5788 -5.0424 0.1222 20 1 -0.4851 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 3.0724 -3.5132 0.6937 24 1 1.9685 -3.8520 -2.1876 25 1 3.7053 -3.7755 -1.6594 26 1 3.5296 -5.9072 -0.4629 27 1 0.5916 -5.0877 -2.6522 28 1 -0.3476 -6.6420 -4.3150 29 1 0.5499 -8.9266 -4.5096 30 1 2.3923 -9.6543 -3.0469 31 1 3.3375 -8.0971 -1.3902 32 1 1.6928 -5.4962 1.1067 33 1 0.5500 -5.0640 -0.2373 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260983722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:11 Heat of formation + Delta-G solvation = 23.769617 kcal Electronic energy + Delta-G solvation = -13676.570560 eV Core-core repulsion = 11473.848479 eV Total energy + Delta-G solvation = -2202.722081 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.71162 -37.55358 -32.98160 -31.14485 -30.71727 -28.42381 -25.03835 -24.53283 -22.60641 -22.27497 -20.01935 -18.47837 -16.69928 -16.21171 -15.25045 -14.86201 -14.46006 -14.21760 -13.46423 -13.21360 -13.00216 -12.33324 -12.21253 -11.84439 -11.48522 -11.33581 -10.99626 -10.88619 -10.77054 -10.50868 -10.23689 -9.87215 -9.52967 -9.02850 -8.78111 -8.77133 -8.40557 -8.29883 -5.95922 -3.97494 1.52032 1.54963 3.34014 3.40282 3.43643 3.92853 4.49134 4.95753 5.01011 5.12593 5.26287 5.36232 5.40623 5.41002 5.53017 5.67397 5.72363 5.75899 6.12395 6.20888 6.29741 6.39251 6.43039 6.57800 6.61059 6.68646 6.76023 6.93443 7.06403 7.17918 7.23018 7.72727 7.87345 8.04168 8.48539 9.09319 9.66122 11.15277 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.055782 B = 0.005700 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.829921 B = 4911.500327 C = 5085.986474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.030 3.970 10 C -0.096 4.096 11 C -0.118 4.118 12 C -0.085 4.085 13 C -0.057 4.057 14 C -0.114 4.114 15 C -0.119 4.119 16 C -0.135 4.135 17 C -0.124 4.124 18 C -0.124 4.124 19 C -0.128 4.128 20 H 0.259 0.741 21 H 0.017 0.983 22 H 0.016 0.984 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.128 0.872 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.057 0.943 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.091 -14.556 -5.037 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.072 0.928 9 C -0.006 4.006 10 C -0.115 4.115 11 C -0.155 4.155 12 C -0.103 4.103 13 C -0.057 4.057 14 C -0.132 4.132 15 C -0.137 4.137 16 C -0.153 4.153 17 C -0.142 4.142 18 C -0.142 4.142 19 C -0.165 4.165 20 H 0.069 0.931 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.146 0.854 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.075 0.925 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.942 -14.435 -5.030 15.566 hybrid contribution 0.431 0.916 -0.050 1.014 sum 3.374 -13.519 -5.080 14.830 Atomic orbital electron populations 1.69963 1.06028 1.26470 1.51227 1.25022 0.94811 0.99156 0.95523 0.86637 0.79878 0.83697 0.78051 1.20738 1.21298 1.19927 1.21261 0.92987 0.91056 1.49986 0.92772 1.19070 0.93430 0.91046 0.97097 1.22574 0.99200 0.94371 0.95323 1.23041 1.01254 0.92507 0.98710 1.21673 0.98947 0.94124 0.95598 1.19955 0.95321 0.94235 0.96139 1.21195 0.96368 1.00188 0.95430 1.21152 0.99979 0.93938 0.98658 1.21064 0.97804 0.96393 1.00046 1.21068 0.97263 0.99312 0.96553 1.21061 1.00480 0.93626 0.99034 1.23104 0.98124 0.98021 0.97288 0.93096 0.96482 0.96534 0.90609 0.90088 0.92350 0.89295 0.85427 0.86305 0.86640 0.86606 0.86465 0.92471 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.56 9.10 -34.44 -0.31 -14.88 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.78 4.81 -27.89 -0.13 0.65 16 10 C -0.10 -1.97 3.59 -89.80 -0.32 -2.29 16 11 C -0.12 -2.14 7.01 -25.92 -0.18 -2.33 16 12 C -0.09 -1.33 3.98 -90.96 -0.36 -1.69 16 13 C -0.06 -0.84 5.29 -104.62 -0.55 -1.39 16 14 C -0.11 -1.70 8.60 -39.58 -0.34 -2.04 16 15 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 16 C -0.14 -1.60 10.05 -39.58 -0.40 -2.00 16 17 C -0.12 -1.47 10.05 -39.59 -0.40 -1.86 16 18 C -0.12 -1.62 9.71 -39.58 -0.38 -2.01 16 19 C -0.13 -2.22 7.10 -25.92 -0.18 -2.40 16 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.02 0.46 7.84 -51.93 -0.41 0.05 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.08 1.55 8.12 -51.93 -0.42 1.13 16 24 H 0.08 1.53 6.08 -51.93 -0.32 1.21 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 27 H 0.13 1.99 6.68 -52.49 -0.35 1.64 16 28 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.40 7.68 -51.93 -0.40 1.00 16 LS Contribution 276.13 15.07 4.16 4.16 Total: -1.00 -30.01 276.13 -9.00 -39.01 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -4.82 Total: -0.89 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: -4.07 Total: -32.68 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 0.74 Total: -26.37 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.01 -9.00 -39.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.781 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds