Wall clock time and date at job start Mon Mar 30 2020 02:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99760 * 2 1 4 4 H 1.48503 * 109.46708 * 270.00183 * 3 2 1 5 5 H 1.48495 * 109.47073 * 30.00099 * 3 2 1 6 6 H 1.48492 * 109.46924 * 150.00236 * 3 2 1 7 7 C 1.37878 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99928 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46976 * 180.02562 * 9 7 2 11 11 C 1.53784 * 113.61270 * 272.49523 * 10 9 7 12 12 C 1.53779 * 87.08045 * 220.02125 * 11 10 9 13 13 C 1.50701 * 113.61419 * 139.98099 * 12 11 10 14 14 C 1.38234 * 120.00002 * 322.22992 * 13 12 11 15 15 C 1.38233 * 119.99612 * 179.78712 * 14 13 12 16 16 C 1.38238 * 120.00347 * 0.44204 * 15 14 13 17 17 C 1.38238 * 119.99651 * 359.80981 * 16 15 14 18 18 C 1.38226 * 120.00194 * 359.97438 * 17 16 15 19 19 C 1.53779 * 87.08402 * 25.43458 * 12 11 10 20 20 H 0.97006 * 120.00470 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46935 * 59.99907 * 9 7 2 22 22 H 1.09003 * 109.46788 * 300.00005 * 9 7 2 23 23 H 1.08994 * 112.91116 * 43.74893 * 10 9 7 24 24 H 1.09002 * 113.61478 * 334.57090 * 11 10 9 25 25 H 1.09004 * 113.61162 * 105.47268 * 11 10 9 26 26 H 1.09006 * 113.61307 * 270.88660 * 12 11 10 27 27 H 1.07994 * 120.00144 * 359.97438 * 14 13 12 28 28 H 1.08000 * 119.99743 * 180.27350 * 15 14 13 29 29 H 1.07998 * 119.99744 * 179.83639 * 16 15 14 30 30 H 1.08000 * 119.99447 * 180.02562 * 17 16 15 31 31 H 1.08003 * 120.00121 * 180.02562 * 18 17 16 32 32 H 1.08997 * 113.61646 * 220.02209 * 19 12 11 33 33 H 1.08998 * 113.69354 * 89.12517 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 2.6923 -4.0903 -1.4083 12 6 2.6044 -5.5421 -0.9089 13 6 2.0258 -6.4952 -1.9228 14 6 0.9880 -6.0884 -2.7403 15 6 0.4602 -6.9612 -3.6733 16 6 0.9641 -8.2439 -3.7825 17 6 1.9984 -8.6523 -2.9613 18 6 2.5292 -7.7781 -2.0314 19 6 1.5788 -5.0424 0.1222 20 1 -0.4851 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 3.0724 -3.5132 0.6937 24 1 1.9685 -3.8520 -2.1876 25 1 3.7053 -3.7755 -1.6594 26 1 3.5296 -5.9072 -0.4629 27 1 0.5916 -5.0877 -2.6522 28 1 -0.3476 -6.6420 -4.3150 29 1 0.5499 -8.9266 -4.5096 30 1 2.3923 -9.6543 -3.0469 31 1 3.3375 -8.0971 -1.3902 32 1 1.6928 -5.4962 1.1067 33 1 0.5500 -5.0640 -0.2373 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260983722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:11 Heat of formation + Delta-G solvation = 9.066374 kcal Electronic energy + Delta-G solvation = -13677.208140 eV Core-core repulsion = 11473.848479 eV Total energy + Delta-G solvation = -2203.359661 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93149 -38.81544 -35.09349 -32.49192 -31.71787 -30.21654 -26.54584 -26.22502 -24.06693 -23.41140 -21.39712 -19.96290 -18.43806 -17.72508 -16.60814 -16.40404 -15.90537 -15.47579 -14.74673 -14.54608 -14.24750 -14.04655 -13.76373 -13.34296 -13.16555 -12.86344 -12.76642 -12.36888 -12.18563 -12.07321 -11.77361 -11.49523 -11.25520 -10.92387 -10.57675 -10.46371 -9.76114 -9.47119 -8.18002 -6.28480 0.50628 0.55797 1.39376 1.40738 1.51810 2.41588 2.91035 3.14535 3.79519 3.85027 3.98993 4.13237 4.20625 4.22147 4.28678 4.35989 4.66456 4.71728 4.88372 4.93445 4.95878 5.11582 5.14333 5.19486 5.23216 5.34056 5.44557 5.60609 5.66680 5.67613 5.75342 5.84069 5.96682 6.19691 6.29399 6.88268 7.40299 8.93657 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.055782 B = 0.005700 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.829921 B = 4911.500327 C = 5085.986474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.036 3.964 10 C -0.103 4.103 11 C -0.118 4.118 12 C -0.062 4.062 13 C -0.077 4.077 14 C -0.137 4.137 15 C -0.130 4.130 16 C -0.132 4.132 17 C -0.123 4.123 18 C -0.126 4.126 19 C -0.122 4.122 20 H 0.262 0.738 21 H -0.011 1.011 22 H -0.014 1.014 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.131 0.869 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.074 0.926 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.718 -16.167 -5.545 17.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.572 4.572 8 H 0.077 0.923 9 C -0.001 4.001 10 C -0.122 4.122 11 C -0.155 4.155 12 C -0.080 4.080 13 C -0.077 4.077 14 C -0.155 4.155 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.140 4.140 18 C -0.144 4.144 19 C -0.159 4.159 20 H 0.071 0.929 21 H 0.008 0.992 22 H 0.005 0.995 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.130 0.870 27 H 0.123 0.877 28 H 0.149 0.851 29 H 0.163 0.837 30 H 0.166 0.834 31 H 0.157 0.843 32 H 0.092 0.908 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.578 -16.058 -5.539 17.593 hybrid contribution -0.136 1.372 0.075 1.381 sum 4.442 -14.686 -5.465 16.287 Atomic orbital electron populations 1.70104 1.07825 1.27616 1.52123 1.25980 0.95726 1.03305 0.94950 0.85482 0.78732 0.78623 0.78437 1.19878 1.20795 1.18687 1.21684 0.93430 0.92300 1.49802 0.92301 1.18941 0.93865 0.93013 0.94254 1.22491 0.98421 0.93893 0.97353 1.22970 1.00910 0.94883 0.96768 1.21495 0.99037 0.92690 0.94760 1.19909 0.96066 0.95181 0.96552 1.21177 0.97439 0.99841 0.97028 1.21379 1.00449 0.94507 0.98425 1.21453 0.97349 0.96010 1.00182 1.21480 0.96634 1.00471 0.95445 1.21329 1.00799 0.92774 0.99506 1.23003 0.97877 0.96046 0.98996 0.92897 0.99222 0.99549 0.90312 0.91656 0.91756 0.86960 0.87736 0.85062 0.83744 0.83425 0.84345 0.90755 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.25 13.29 21.45 0.28 -57.96 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 3 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.53 -31.01 9.10 25.60 0.23 -30.78 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.04 1.97 4.81 29.85 0.14 2.11 16 10 C -0.10 -4.32 3.59 -10.27 -0.04 -4.36 16 11 C -0.12 -4.35 7.01 31.12 0.22 -4.13 16 12 C -0.06 -1.87 3.98 -11.01 -0.04 -1.91 16 13 C -0.08 -2.20 5.29 -19.86 -0.11 -2.31 16 14 C -0.14 -4.12 8.60 22.27 0.19 -3.93 16 15 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 16 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 17 C -0.12 -2.45 10.05 22.27 0.22 -2.22 16 18 C -0.13 -2.93 9.71 22.27 0.22 -2.71 16 19 C -0.12 -4.25 7.10 31.12 0.22 -4.03 16 20 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 21 H -0.01 -0.62 7.84 -2.39 -0.02 -0.64 16 22 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 23 H 0.08 3.23 8.12 -2.39 -0.02 3.21 16 24 H 0.06 2.60 6.08 -2.39 -0.01 2.58 16 25 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.11 2.89 8.10 -2.38 -0.02 2.87 16 27 H 0.10 3.53 6.68 -2.91 -0.02 3.51 16 28 H 0.13 2.81 8.06 -2.91 -0.02 2.78 16 29 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 30 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 32 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.06 2.40 7.68 -2.39 -0.02 2.39 16 Total: -1.00 -65.96 276.13 5.55 -60.42 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 1.07 Total: 9.90 kcal Atomic # 6 Polarization: -61.64 SS G_CDS: 2.17 Total: -59.47 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.28 Total: -57.96 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -65.96 5.55 -60.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.482 kcal (2) G-P(sol) polarization free energy of solvation -65.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds