Wall clock time and date at job start Mon Mar 30 2020 02:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35652 * 120.23368 * 2 1 4 4 C 1.39687 * 121.72754 * 180.02562 * 3 2 1 5 5 C 1.35629 * 121.81778 * 359.97438 * 4 3 2 6 6 C 1.41158 * 119.59423 * 0.02562 * 5 4 3 7 7 N 1.32064 * 134.68038 * 179.97438 * 6 5 4 8 8 N 1.39958 * 108.96017 * 180.02562 * 7 6 5 9 9 C 1.46503 * 125.02210 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.46957 * 305.02382 * 9 8 7 11 11 H 1.07998 * 120.00069 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99966 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99752 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00191 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47247 * 89.99751 * 14 12 10 16 16 H 1.48505 * 109.47158 * 209.99911 * 14 12 10 17 17 H 1.48496 * 109.47122 * 330.00037 * 14 12 10 18 18 C 1.33991 * 109.95453 * 359.97438 * 8 7 6 19 19 C 1.38244 * 107.90445 * 0.02562 * 18 8 7 20 20 H 1.08996 * 109.47058 * 90.00071 * 1 2 3 21 21 H 1.09001 * 109.46804 * 209.99896 * 1 2 3 22 22 H 1.08999 * 109.46972 * 329.99995 * 1 2 3 23 23 H 1.07999 * 119.13401 * 0.02643 * 3 2 1 24 24 H 1.07997 * 119.08832 * 179.97438 * 4 3 2 25 25 H 1.08001 * 120.20627 * 179.97438 * 5 4 3 26 26 H 1.09000 * 109.46825 * 65.02089 * 9 8 7 27 27 H 1.08992 * 109.46934 * 185.02133 * 9 8 7 28 28 H 0.96999 * 119.99543 * 179.97438 * 13 12 10 29 29 H 1.07994 * 126.04161 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.1720 0.0000 4 6 3.5865 1.2084 -0.0005 5 6 4.3313 0.0750 -0.0006 6 6 3.6884 -1.1817 -0.0006 7 7 4.1015 -2.4361 -0.0010 8 7 2.9864 -3.2820 -0.0014 9 6 3.0417 -4.7460 -0.0025 10 6 3.8753 -5.2163 -1.1665 11 1 4.3197 -4.4967 -1.8381 12 6 4.0705 -6.5652 -1.3742 13 7 3.5296 -7.4415 -0.5560 14 14 5.1030 -7.1483 -2.8175 15 1 6.5229 -7.2605 -2.3970 16 1 4.6148 -8.4753 -3.2714 17 1 4.9924 -6.1726 -3.9314 18 6 1.8609 -2.5550 -0.0006 19 6 2.2177 -1.2194 -0.0003 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6398 2.1013 0.0004 24 1 4.0867 2.1655 -0.0009 25 1 5.4098 0.1335 -0.0014 26 1 3.4894 -5.0933 0.9287 27 1 2.0325 -5.1476 -0.0924 28 1 3.6666 -8.3906 -0.7024 29 1 0.8534 -2.9437 -0.0002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261187479.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:58 Heat of formation + Delta-G solvation = 79.686168 kcal Electronic energy + Delta-G solvation = -13521.314304 eV Core-core repulsion = 11217.476604 eV Total energy + Delta-G solvation = -2303.837700 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57560 -37.03566 -33.55478 -32.80996 -31.15800 -28.83532 -27.42516 -26.34974 -23.84722 -21.37101 -21.28183 -19.15176 -16.97429 -16.28217 -16.06425 -15.21076 -14.56292 -14.39489 -13.63560 -13.24228 -13.09874 -12.51449 -12.35604 -12.12071 -12.03580 -11.48947 -11.14768 -10.93545 -10.83174 -10.71166 -10.33786 -9.80504 -9.53551 -9.40507 -8.72168 -7.88900 -7.00120 -6.34174 -4.39952 1.23620 2.35832 3.09006 3.20170 3.26094 3.29801 3.39428 4.24854 4.33820 4.83156 5.02464 5.17037 5.28405 5.43953 5.58299 5.78135 5.85190 5.95783 5.99923 6.10279 6.11591 6.56585 6.78968 6.87004 6.96403 7.01283 7.15958 7.46817 7.57679 7.73470 7.79191 8.47029 8.68419 9.26427 10.75000 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.046692 B = 0.007005 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.528139 B = 3996.433038 C = 4318.117366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.006 4.006 3 C -0.180 4.180 4 C -0.090 4.090 5 C -0.104 4.104 6 C 0.079 3.921 7 N -0.294 5.294 8 N -0.269 5.269 9 C 0.244 3.756 10 C -0.532 4.532 11 H 0.071 0.929 12 C 0.064 3.936 13 N -0.894 5.894 14 Si 0.911 3.089 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.271 1.271 18 C 0.063 3.937 19 C -0.220 4.220 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.111 0.889 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.269 0.731 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.183 11.871 1.158 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.009 4.009 3 C -0.200 4.200 4 C -0.113 4.113 5 C -0.125 4.125 6 C -0.073 4.073 7 N -0.122 5.122 8 N -0.040 5.040 9 C 0.127 3.873 10 C -0.570 4.570 11 H 0.089 0.911 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.738 3.262 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.196 1.196 18 C -0.096 4.096 19 C -0.230 4.230 20 H 0.087 0.913 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.129 0.871 24 H 0.134 0.866 25 H 0.137 0.863 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.114 10.639 1.199 11.470 hybrid contribution -0.182 -0.041 -0.714 0.738 sum -4.295 10.598 0.485 11.446 Atomic orbital electron populations 1.20786 0.91918 1.02324 1.02054 1.18958 0.94563 0.91138 0.96191 1.20152 0.94024 0.96606 1.09249 1.20410 0.93834 0.97193 0.99843 1.19773 0.98938 0.88721 1.05081 1.21014 0.92542 0.92939 1.00813 1.77821 1.07499 0.98649 1.28250 1.49571 1.02497 1.09721 1.42237 1.20026 1.00141 0.67001 1.00176 1.21181 1.32449 0.92369 1.11011 0.91054 1.24942 0.95704 0.96105 0.97159 1.69915 1.43819 1.02265 1.37159 0.86267 0.80232 0.77957 0.81741 1.20175 1.20877 1.19600 1.22601 0.93303 0.90910 1.02814 1.19386 0.93816 0.92299 1.17513 0.91269 0.91759 0.91776 0.87094 0.86645 0.86312 0.92758 0.92178 0.92149 0.80784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.96 36.01 0.36 -0.98 15 2 C -0.01 -0.09 5.89 -104.45 -0.62 -0.71 15 3 C -0.18 -2.61 9.54 -39.97 -0.38 -2.99 15 4 C -0.09 -1.34 9.89 -39.97 -0.40 -1.73 15 5 C -0.10 -1.82 10.08 -39.41 -0.40 -2.22 15 6 C 0.08 1.67 7.49 -83.05 -0.62 1.05 15 7 N -0.29 -7.08 12.34 33.25 0.41 -6.67 15 8 N -0.27 -6.19 3.62 -62.00 -0.22 -6.41 15 9 C 0.24 6.06 6.20 -5.19 -0.03 6.03 15 10 C -0.53 -14.65 9.20 -34.44 -0.32 -14.97 15 11 H 0.07 2.05 7.81 -52.49 -0.41 1.64 15 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 13 N -0.89 -24.87 13.29 55.43 0.74 -24.13 15 14 Si 0.91 21.22 29.54 -169.99 -5.02 16.19 15 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 18 C 0.06 1.22 11.17 -16.61 -0.19 1.04 15 19 C -0.22 -4.19 6.13 -105.19 -0.64 -4.84 15 20 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.06 0.72 7.94 -51.93 -0.41 0.30 15 22 H 0.06 0.63 8.08 -51.93 -0.42 0.21 15 23 H 0.11 1.29 8.06 -52.49 -0.42 0.86 15 24 H 0.12 1.32 8.06 -52.49 -0.42 0.90 15 25 H 0.12 1.88 8.06 -52.49 -0.42 1.46 15 26 H 0.05 1.42 8.14 -51.93 -0.42 1.00 15 27 H 0.06 1.44 8.04 -51.93 -0.42 1.02 15 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 29 H 0.18 2.65 8.06 -52.49 -0.42 2.23 15 LS Contribution 259.81 15.07 3.92 3.92 Total: -1.00 -30.20 259.81 -6.84 -37.04 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -3.33 Total: -1.26 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -3.33 Total: -18.68 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.92 Total: -37.21 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.20 -6.84 -37.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261187479.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.727 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds