Wall clock time and date at job start Mon Mar 30 2020 02:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38549 * 125.49868 * 2 1 4 4 C 1.38926 * 107.56987 * 180.02562 * 3 2 1 5 5 C 1.40797 * 132.96702 * 180.29019 * 4 3 2 6 6 C 1.36068 * 119.22529 * 180.19237 * 5 4 3 7 7 C 1.40478 * 119.58897 * 359.48334 * 6 5 4 8 8 C 1.50699 * 119.78381 * 180.22772 * 7 6 5 9 9 C 1.50700 * 109.46795 * 90.00234 * 8 7 6 10 10 H 1.08005 * 120.00235 * 0.02562 * 9 8 7 11 11 C 1.37883 * 120.00126 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99809 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99894 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47237 * 90.00442 * 13 11 9 15 15 H 1.48502 * 109.46810 * 209.99758 * 13 11 9 16 16 H 1.48495 * 109.47399 * 329.99508 * 13 11 9 17 17 C 1.34928 * 120.43058 * 0.25714 * 7 6 5 18 18 N 1.36540 * 120.66202 * 0.02562 * 17 7 6 19 19 N 1.31486 * 125.49545 * 180.02562 * 2 1 3 20 20 H 1.08995 * 109.47337 * 90.00154 * 1 2 3 21 21 H 1.09005 * 109.47323 * 210.00060 * 1 2 3 22 22 H 1.09003 * 109.47218 * 329.99946 * 1 2 3 23 23 H 1.08003 * 126.21374 * 0.02562 * 3 2 1 24 24 H 1.07999 * 120.39168 * 359.95790 * 5 4 3 25 25 H 1.08002 * 120.20789 * 179.76731 * 6 5 4 26 26 H 1.09000 * 109.47461 * 210.00222 * 8 7 6 27 27 H 1.09002 * 109.47178 * 330.00739 * 8 7 6 28 28 H 0.96996 * 120.00124 * 179.97438 * 12 11 9 29 29 H 1.08005 * 119.67108 * 179.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.1280 0.0000 4 6 3.6333 0.7003 -0.0006 5 6 4.8635 1.3851 0.0044 6 6 6.0215 0.6707 -0.0019 7 6 5.9705 -0.7331 -0.0021 8 6 7.2504 -1.5287 -0.0038 9 6 7.6787 -1.7941 1.4165 10 1 7.0833 -1.4241 2.2382 11 6 8.8300 -2.5103 1.6670 12 7 9.5547 -2.9612 0.6665 13 14 9.3604 -2.8399 3.4276 14 1 8.7615 -4.1161 3.8943 15 1 10.8410 -2.9365 3.4886 16 1 8.9005 -1.7292 4.2993 17 6 4.7831 -1.3738 -0.0014 18 7 3.6126 -0.6709 -0.0010 19 7 2.2704 -1.0705 -0.0005 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 1.9726 2.1534 0.0004 24 1 4.8877 2.4648 0.0092 25 1 6.9740 1.1798 -0.0020 26 1 7.0886 -2.4762 -0.5176 27 1 8.0283 -0.9644 -0.5183 28 1 10.3648 -3.4647 0.8427 29 1 4.7582 -2.4536 -0.0020 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261208674.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:05 Heat of formation + Delta-G solvation = 68.350091 kcal Electronic energy + Delta-G solvation = -13446.031983 eV Core-core repulsion = 11141.702713 eV Total energy + Delta-G solvation = -2304.329270 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.86649 -38.71682 -35.36958 -34.00311 -33.23325 -30.35197 -29.83447 -27.61710 -24.96355 -24.18113 -22.68265 -20.90554 -18.54884 -18.27840 -17.44768 -16.72300 -16.57344 -15.78910 -15.45343 -14.68634 -14.52290 -14.07919 -13.80370 -13.62637 -13.48036 -13.12418 -12.68990 -12.59517 -12.39699 -12.23160 -11.73214 -11.54169 -11.52054 -11.22871 -10.62576 -9.96606 -8.48397 -8.19737 -6.35786 -0.07410 0.26510 1.35323 1.40080 1.41060 1.51757 1.76391 2.36757 2.56991 3.09133 3.39137 3.69356 4.01414 4.04191 4.17974 4.44035 4.46508 4.75845 4.82367 4.88757 4.95424 5.03166 5.16019 5.25581 5.31163 5.58330 5.68364 5.70532 5.79500 6.03609 6.11876 6.69273 6.75648 7.33161 8.86048 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.049694 B = 0.006512 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.311869 B = 4298.806172 C = 4458.645090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.082 3.918 3 C -0.298 4.298 4 C 0.079 3.921 5 C -0.114 4.114 6 C -0.076 4.076 7 C -0.086 4.086 8 C 0.070 3.930 9 C -0.532 4.532 10 H 0.053 0.947 11 C 0.011 3.989 12 N -0.925 5.925 13 Si 0.961 3.039 14 H -0.276 1.276 15 H -0.278 1.278 16 H -0.266 1.266 17 C 0.067 3.933 18 N -0.281 5.281 19 N -0.373 5.373 20 H 0.093 0.907 21 H 0.072 0.928 22 H 0.105 0.895 23 H 0.182 0.818 24 H 0.184 0.816 25 H 0.155 0.845 26 H 0.010 0.990 27 H 0.026 0.974 28 H 0.267 0.733 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.317 9.519 -0.993 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.327 4.327 4 C -0.041 4.041 5 C -0.133 4.133 6 C -0.099 4.099 7 C -0.090 4.090 8 C 0.032 3.968 9 C -0.570 4.570 10 H 0.071 0.929 11 C -0.188 4.188 12 N -0.564 5.564 13 Si 0.786 3.214 14 H -0.202 1.202 15 H -0.203 1.203 16 H -0.191 1.191 17 C -0.057 4.057 18 N -0.046 5.046 19 N -0.200 5.200 20 H 0.112 0.888 21 H 0.091 0.909 22 H 0.124 0.876 23 H 0.200 0.800 24 H 0.201 0.799 25 H 0.173 0.827 26 H 0.029 0.971 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.297 8.089 -1.037 14.756 hybrid contribution 0.802 0.040 0.706 1.069 sum -11.496 8.128 -0.331 14.083 Atomic orbital electron populations 1.20368 0.83151 1.04602 1.04364 1.22966 0.98894 0.90095 0.95384 1.21504 0.88288 1.00853 1.22058 1.20281 0.97570 0.83696 1.02528 1.20964 0.87833 1.02037 1.02468 1.21429 1.00057 0.92512 0.95886 1.20038 0.94366 0.95558 0.99017 1.17995 0.88383 0.93731 0.96662 1.21345 1.08445 1.34914 0.92332 0.92860 1.25818 0.96378 0.95207 1.01407 1.70047 1.16168 1.37402 1.32823 0.85503 0.77517 0.78712 0.79687 1.20194 1.20324 1.19085 1.21196 0.81439 0.98328 1.04708 1.46237 1.05474 1.06333 1.46576 1.77695 0.83627 1.23863 1.34806 0.88813 0.90930 0.87609 0.80044 0.79871 0.82724 0.97142 0.95599 0.92430 0.82846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.43 71.23 0.74 -0.52 15 2 C 0.08 2.50 7.15 42.68 0.31 2.81 15 3 C -0.30 -8.65 10.83 22.51 0.24 -8.41 15 4 C 0.08 2.72 6.81 39.11 0.27 2.98 15 5 C -0.11 -3.41 10.11 22.39 0.23 -3.18 15 6 C -0.08 -2.64 9.74 22.31 0.22 -2.42 15 7 C -0.09 -3.62 5.03 -20.08 -0.10 -3.72 15 8 C 0.07 3.50 5.09 29.10 0.15 3.65 15 9 C -0.53 -29.04 9.09 25.60 0.23 -28.81 15 10 H 0.05 2.89 7.74 -2.91 -0.02 2.87 15 11 C 0.01 0.60 5.46 84.66 0.46 1.06 15 12 N -0.92 -53.55 13.29 21.45 0.28 -53.27 15 13 Si 0.96 43.16 29.54 68.60 2.03 45.19 15 14 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 15 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 16 H -0.27 -11.59 7.11 99.48 0.71 -10.89 15 17 C 0.07 2.82 10.80 83.20 0.90 3.72 15 18 N -0.28 -11.25 3.90 -187.79 -0.73 -11.98 15 19 N -0.37 -14.40 12.66 -47.88 -0.61 -15.01 15 20 H 0.09 1.47 8.14 -2.39 -0.02 1.45 15 21 H 0.07 1.38 8.14 -2.38 -0.02 1.36 15 22 H 0.11 1.40 8.14 -2.39 -0.02 1.38 15 23 H 0.18 3.79 8.06 -2.91 -0.02 3.77 15 24 H 0.18 3.77 8.06 -2.91 -0.02 3.74 15 25 H 0.16 4.78 8.06 -2.91 -0.02 4.75 15 26 H 0.01 0.55 8.07 -2.39 -0.02 0.53 15 27 H 0.03 1.33 8.09 -2.39 -0.02 1.31 15 28 H 0.27 14.54 8.31 -92.71 -0.77 13.77 15 29 H 0.15 6.46 8.06 -2.91 -0.02 6.43 15 Total: -1.00 -66.07 260.11 5.75 -60.32 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.14 Total: 7.59 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 3.64 Total: -32.83 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -1.05 Total: -80.26 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -66.07 5.75 -60.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261208674.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.667 kcal (2) G-P(sol) polarization free energy of solvation -66.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds