Wall clock time and date at job start Mon Mar 30 2020 02:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00315 * 2 1 4 4 H 1.48498 * 109.47060 * 269.99662 * 3 2 1 5 5 H 1.48496 * 109.46844 * 29.99499 * 3 2 1 6 6 H 1.48498 * 109.46998 * 149.99456 * 3 2 1 7 7 C 1.37879 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99907 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46944 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99810 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00145 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99857 * 179.97438 * 11 10 9 14 14 H 1.09000 * 110.33279 * 317.74548 * 13 11 10 15 15 C 1.54904 * 110.37221 * 80.00254 * 13 11 10 16 16 C 1.55143 * 101.68431 * 155.98955 * 15 13 11 17 17 H 1.09003 * 110.70341 * 82.75307 * 16 15 13 18 18 F 1.39904 * 110.70391 * 205.97990 * 16 15 13 19 19 C 1.54354 * 102.99982 * 324.39260 * 16 15 13 20 20 N 1.47439 * 107.25080 * 22.23089 * 19 16 15 21 21 H 0.97010 * 119.99818 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47415 * 60.00024 * 9 7 2 23 23 H 1.08998 * 109.47144 * 299.99804 * 9 7 2 24 24 H 0.96998 * 120.00074 * 359.97438 * 10 9 7 25 25 H 1.09002 * 110.99035 * 274.10136 * 15 13 11 26 26 H 1.08995 * 110.99272 * 37.88025 * 15 13 11 27 27 H 1.09001 * 109.85687 * 262.82973 * 19 16 15 28 28 H 1.09008 * 109.90516 * 141.65771 * 19 16 15 29 29 H 1.00901 * 111.00264 * 238.75381 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7536 -4.8834 0.0015 12 8 0.5612 -5.1050 -0.0003 13 6 2.7329 -6.0288 0.0022 14 1 3.5545 -5.8251 -0.6846 15 6 3.2739 -6.2749 1.4326 16 6 3.7028 -7.7638 1.3545 17 1 4.6945 -7.8564 0.9116 18 9 3.6684 -8.3556 2.6218 19 6 2.6330 -8.3854 0.4317 20 7 2.0542 -7.2894 -0.3668 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 3.1566 -3.4355 0.0021 25 1 4.1292 -5.6326 1.6424 26 1 2.4899 -6.1329 2.1764 27 1 1.8553 -8.8576 1.0321 28 1 3.0937 -9.1213 -0.2275 29 1 1.0585 -7.2208 -0.2186 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707446419.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:11 Heat of formation + Delta-G solvation = -95.260008 kcal Electronic energy + Delta-G solvation = -14323.557546 eV Core-core repulsion = 11581.364385 eV Total energy + Delta-G solvation = -2742.193161 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.101 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.78224 -39.62902 -37.07449 -34.31023 -32.43515 -29.97393 -29.27417 -27.08874 -23.48796 -21.78159 -21.30693 -19.75913 -17.97614 -16.80442 -16.22118 -15.67626 -15.08987 -15.01226 -14.55906 -14.38928 -13.84197 -13.59401 -13.53991 -12.76750 -12.19207 -12.01551 -11.75038 -11.58996 -11.09570 -11.00899 -10.99302 -10.91932 -10.36332 -9.46098 -9.21597 -8.80029 -8.64789 -7.99969 -6.21201 -4.28670 3.08998 3.21631 3.27751 3.29973 3.76516 4.07877 4.18616 4.28662 4.41438 4.62616 4.80835 5.13324 5.15226 5.18648 5.40904 5.55139 5.62778 5.69572 5.98456 6.60859 7.20956 7.25161 7.33967 7.44095 7.59123 7.90814 8.49812 8.68768 8.94983 9.37898 10.88943 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.057555 B = 0.005826 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.375574 B = 4804.658154 C = 5067.920213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.704 5.704 11 C 0.498 3.502 12 O -0.552 6.552 13 C 0.058 3.942 14 H 0.111 0.889 15 C -0.167 4.167 16 C 0.070 3.930 17 H 0.101 0.899 18 F -0.207 7.207 19 C 0.024 3.976 20 N -0.664 5.664 21 H 0.266 0.734 22 H 0.029 0.971 23 H 0.028 0.972 24 H 0.392 0.608 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.765 -12.297 1.471 15.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.351 5.351 11 C 0.282 3.718 12 O -0.431 6.431 13 C -0.055 4.055 14 H 0.128 0.872 15 C -0.206 4.206 16 C 0.033 3.967 17 H 0.119 0.881 18 F -0.188 7.188 19 C -0.106 4.106 20 N -0.298 5.298 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.045 0.955 24 H 0.225 0.775 25 H 0.113 0.887 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.073 -12.425 0.907 14.845 hybrid contribution 0.509 1.208 0.944 1.615 sum 8.581 -11.217 1.851 14.244 Atomic orbital electron populations 1.69974 1.06134 1.27397 1.48700 1.24958 0.94927 0.99510 0.94606 0.86396 0.79600 0.82544 0.78267 1.20406 1.20981 1.19727 1.21206 0.93281 0.90367 1.53485 0.91822 1.19161 0.88286 0.81886 0.97882 1.46428 1.11329 1.05936 1.71430 1.20317 0.89238 0.84620 0.77672 1.90650 1.16634 1.84444 1.51393 1.22479 0.97153 0.90314 0.95545 0.87165 1.23657 1.03171 0.95761 0.98027 1.22879 1.01446 0.92435 0.79930 0.88142 1.92817 1.97948 1.85405 1.42633 1.23253 0.97091 0.95280 0.95018 1.61866 1.10939 1.01529 1.55442 0.92379 0.95314 0.95453 0.77489 0.88662 0.89380 0.91401 0.89254 0.81751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.81 13.29 55.43 0.74 -25.07 15 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 15 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 7 C -0.55 -14.53 9.28 -34.44 -0.32 -14.85 15 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 15 9 C 0.25 6.46 5.43 -5.19 -0.03 6.43 15 10 N -0.70 -14.27 5.55 -61.47 -0.34 -14.61 15 11 C 0.50 9.58 7.13 -10.98 -0.08 9.50 15 12 O -0.55 -12.81 15.58 5.55 0.09 -12.72 15 13 C 0.06 0.82 3.81 -67.34 -0.26 0.56 15 14 H 0.11 1.33 8.14 -51.93 -0.42 0.90 15 15 C -0.17 -2.02 6.28 -24.59 -0.15 -2.17 15 16 C 0.07 0.75 4.75 -24.89 -0.12 0.63 15 17 H 0.10 0.83 8.14 -51.93 -0.42 0.41 15 18 F -0.21 -2.58 17.19 2.25 0.04 -2.54 15 19 C 0.02 0.26 7.41 -2.82 -0.02 0.24 15 20 N -0.66 -9.15 7.30 -105.03 -0.77 -9.92 15 21 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 22 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.03 0.79 8.14 -51.93 -0.42 0.36 15 24 H 0.39 6.71 8.32 -40.82 -0.34 6.37 15 25 H 0.09 0.98 8.14 -51.93 -0.42 0.55 15 26 H 0.09 1.23 8.05 -51.93 -0.42 0.81 15 27 H 0.07 0.73 8.10 -51.93 -0.42 0.31 15 28 H 0.09 0.82 8.14 -51.92 -0.42 0.40 15 29 H 0.36 5.61 7.28 -39.29 -0.29 5.32 15 LS Contribution 255.81 15.07 3.86 3.86 Total: -1.00 -30.96 255.81 -6.02 -36.98 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -3.53 Total: 6.48 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.07 Total: 1.99 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.37 Total: -49.61 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.96 -6.02 -36.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707446419.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.275 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds