Wall clock time and date at job start Mon Mar 30 2020 02:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00315 * 2 1 4 4 H 1.48498 * 109.47060 * 269.99662 * 3 2 1 5 5 H 1.48496 * 109.46844 * 29.99499 * 3 2 1 6 6 H 1.48498 * 109.46998 * 149.99456 * 3 2 1 7 7 C 1.37879 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99907 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46944 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99810 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00145 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99857 * 179.97438 * 11 10 9 14 14 H 1.09000 * 110.33279 * 317.74548 * 13 11 10 15 15 C 1.54904 * 110.37221 * 80.00254 * 13 11 10 16 16 C 1.55143 * 101.68431 * 155.98955 * 15 13 11 17 17 H 1.09003 * 110.70341 * 82.75307 * 16 15 13 18 18 F 1.39904 * 110.70391 * 205.97990 * 16 15 13 19 19 C 1.54354 * 102.99982 * 324.39260 * 16 15 13 20 20 N 1.47439 * 107.25080 * 22.23089 * 19 16 15 21 21 H 0.97010 * 119.99818 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47415 * 60.00024 * 9 7 2 23 23 H 1.08998 * 109.47144 * 299.99804 * 9 7 2 24 24 H 0.96998 * 120.00074 * 359.97438 * 10 9 7 25 25 H 1.09002 * 110.99035 * 274.10136 * 15 13 11 26 26 H 1.08995 * 110.99272 * 37.88025 * 15 13 11 27 27 H 1.09001 * 109.85687 * 262.82973 * 19 16 15 28 28 H 1.09008 * 109.90516 * 141.65771 * 19 16 15 29 29 H 1.00901 * 111.00264 * 238.75381 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7536 -4.8834 0.0015 12 8 0.5612 -5.1050 -0.0003 13 6 2.7329 -6.0288 0.0022 14 1 3.5545 -5.8251 -0.6846 15 6 3.2739 -6.2749 1.4326 16 6 3.7028 -7.7638 1.3545 17 1 4.6945 -7.8564 0.9116 18 9 3.6684 -8.3556 2.6218 19 6 2.6330 -8.3854 0.4317 20 7 2.0542 -7.2894 -0.3668 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 3.1566 -3.4355 0.0021 25 1 4.1292 -5.6326 1.6424 26 1 2.4899 -6.1329 2.1764 27 1 1.8553 -8.8576 1.0321 28 1 3.0937 -9.1213 -0.2275 29 1 1.0585 -7.2208 -0.2186 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707446419.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:11 Heat of formation + Delta-G solvation = -120.207472 kcal Electronic energy + Delta-G solvation = -14324.639349 eV Core-core repulsion = 11581.364385 eV Total energy + Delta-G solvation = -2743.274964 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.68753 -41.08256 -38.33981 -36.20416 -34.41492 -31.12527 -30.41327 -28.89130 -25.21107 -23.30280 -22.20715 -21.30594 -19.44236 -18.11805 -17.67864 -17.11273 -16.71957 -16.41753 -15.78185 -15.77511 -15.18261 -14.82378 -14.68975 -14.20588 -14.01173 -13.87514 -12.97758 -12.96454 -12.75191 -12.67574 -12.24522 -11.99266 -11.83803 -11.50675 -10.83731 -10.82185 -9.92828 -9.67334 -8.30375 -6.47147 1.43587 1.45718 1.56614 1.57179 2.24402 2.45553 3.02749 3.05424 3.23843 3.41373 3.67113 3.86569 3.98600 4.21212 4.30654 4.63142 4.71523 4.86515 5.05256 5.08009 5.20607 5.43498 5.57414 5.66931 5.82118 6.09455 6.63148 6.80360 7.20885 7.38445 8.81777 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.057555 B = 0.005826 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.375574 B = 4804.658154 C = 5067.920213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.265 3.735 10 N -0.698 5.698 11 C 0.494 3.506 12 O -0.598 6.598 13 C 0.071 3.929 14 H 0.143 0.857 15 C -0.166 4.166 16 C 0.077 3.923 17 H 0.138 0.862 18 F -0.218 7.218 19 C 0.021 3.979 20 N -0.672 5.672 21 H 0.269 0.731 22 H -0.011 1.011 23 H -0.012 1.012 24 H 0.411 0.589 25 H 0.121 0.879 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.801 -12.517 1.361 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.142 3.858 10 N -0.347 5.347 11 C 0.280 3.720 12 O -0.480 6.480 13 C -0.042 4.042 14 H 0.161 0.839 15 C -0.205 4.205 16 C 0.040 3.960 17 H 0.156 0.844 18 F -0.199 7.199 19 C -0.108 4.108 20 N -0.305 5.305 21 H 0.077 0.923 22 H 0.007 0.993 23 H 0.006 0.994 24 H 0.248 0.752 25 H 0.139 0.861 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.171 -12.683 0.799 16.920 hybrid contribution -0.498 1.194 0.981 1.624 sum 10.673 -11.489 1.780 15.782 Atomic orbital electron populations 1.70140 1.08317 1.28590 1.49946 1.26076 0.95765 1.03964 0.93840 0.85149 0.78518 0.76910 0.78602 1.19607 1.21120 1.17768 1.21618 0.94407 0.90428 1.52909 0.89550 1.18586 0.88718 0.84326 0.94191 1.46124 1.11421 1.05264 1.71860 1.21326 0.89657 0.85330 0.75643 1.90628 1.19238 1.85164 1.52943 1.22516 0.95999 0.87899 0.97741 0.83944 1.23683 1.03229 0.97873 0.95756 1.23008 1.02992 0.90649 0.79308 0.84408 1.92802 1.98058 1.85442 1.43570 1.23409 0.97279 0.94716 0.95409 1.62014 1.10186 1.02053 1.56238 0.92253 0.99329 0.99417 0.75245 0.86113 0.91974 0.91824 0.86733 0.83294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 13.29 21.45 0.28 -55.51 15 2 C 0.00 0.18 5.46 84.66 0.46 0.64 15 3 Si 0.99 41.67 29.54 68.60 2.03 43.69 15 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 15 5 H -0.29 -12.05 7.11 99.48 0.71 -11.34 15 6 H -0.25 -9.92 7.11 99.48 0.71 -9.21 15 7 C -0.56 -29.63 9.28 25.60 0.24 -29.39 15 8 H 0.09 4.11 7.60 -2.91 -0.02 4.09 15 9 C 0.26 14.29 5.43 85.63 0.46 14.76 15 10 N -0.70 -28.34 5.55 -466.77 -2.59 -30.93 15 11 C 0.49 19.12 7.13 87.66 0.63 19.74 15 12 O -0.60 -28.93 15.58 -3.05 -0.05 -28.98 15 13 C 0.07 1.85 3.81 44.64 0.17 2.02 15 14 H 0.14 2.86 8.14 -2.39 -0.02 2.84 15 15 C -0.17 -3.62 6.28 31.98 0.20 -3.42 15 16 C 0.08 1.37 4.75 31.79 0.15 1.53 15 17 H 0.14 1.53 8.14 -2.39 -0.02 1.51 15 18 F -0.22 -4.88 17.19 44.97 0.77 -4.11 15 19 C 0.02 0.41 7.41 86.66 0.64 1.06 15 20 N -0.67 -17.55 7.30 -486.21 -3.55 -21.10 15 21 H 0.27 15.04 8.31 -92.70 -0.77 14.27 15 22 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 15 23 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 15 24 H 0.41 13.38 8.32 -92.71 -0.77 12.61 15 25 H 0.12 2.03 8.14 -2.39 -0.02 2.01 15 26 H 0.06 1.70 8.05 -2.39 -0.02 1.68 15 27 H 0.06 1.29 8.10 -2.39 -0.02 1.27 15 28 H 0.11 1.69 8.14 -2.38 -0.02 1.67 15 29 H 0.35 10.87 7.28 -89.69 -0.65 10.22 15 Total: -1.00 -69.84 255.81 -0.40 -70.24 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.25 Total: 19.77 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 2.95 Total: 6.93 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -5.85 Total: -107.54 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.05 Total: -28.98 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.77 Total: -4.11 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -69.84 -0.40 -70.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707446419.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.971 kcal (2) G-P(sol) polarization free energy of solvation -69.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds