Wall clock time and date at job start Mon Mar 30 2020 02:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86805 * 119.99729 * 2 1 4 4 H 1.48499 * 109.47076 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47246 * 119.99677 * 3 2 1 6 6 H 1.48496 * 109.47293 * 240.00248 * 3 2 1 7 7 C 1.39557 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99980 * 151.61855 * 7 2 1 9 9 N 1.36340 * 119.99835 * 331.61347 * 7 2 1 10 10 C 1.34409 * 124.30389 * 329.31122 * 9 7 2 11 11 O 1.21499 * 126.16040 * 0.04062 * 10 9 7 12 12 C 1.49274 * 107.68199 * 179.91456 * 10 9 7 13 13 O 1.21431 * 127.53810 * 180.14148 * 12 10 9 14 14 C 1.47801 * 104.92531 * 0.33794 * 12 10 9 15 15 C 1.39214 * 133.10166 * 179.80366 * 14 12 10 16 16 C 1.38222 * 119.71068 * 180.02562 * 15 14 12 17 17 C 1.38387 * 120.05007 * 359.97289 * 16 15 14 18 18 C 1.38376 * 120.64355 * 359.97438 * 17 16 15 19 19 C 1.38760 * 120.18332 * 0.03673 * 18 17 16 20 20 H 0.97005 * 119.99541 * 174.66930 * 1 2 3 21 21 H 1.08002 * 120.14661 * 359.97438 * 15 14 12 22 22 H 1.08000 * 119.97820 * 180.02562 * 16 15 14 23 23 H 1.07997 * 119.67646 * 179.97438 * 17 16 15 24 24 H 1.07997 * 119.90336 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 1.2790 2.7465 -0.0006 5 1 3.0978 1.6966 1.2125 6 1 3.0978 1.6966 -1.2125 7 6 2.0080 -1.2086 -0.0005 8 1 2.9906 -1.2645 -0.4451 9 7 1.4493 -2.3186 0.5603 10 6 0.5950 -2.2948 1.5977 11 8 0.2000 -1.3035 2.1786 12 6 0.2163 -3.7055 1.9056 13 8 -0.5376 -4.0966 2.7734 14 6 0.9635 -4.5226 0.9265 15 6 1.0433 -5.8931 0.6951 16 6 1.8498 -6.3704 -0.3209 17 6 2.5735 -5.4882 -1.1037 18 6 2.4996 -4.1243 -0.8818 19 6 1.6959 -3.6252 0.1333 20 1 -0.4850 -0.8365 -0.0781 21 1 0.4781 -6.5803 1.3073 22 1 1.9146 -7.4327 -0.5045 23 1 3.2021 -5.8678 -1.8957 24 1 3.0692 -3.4465 -1.5002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019966874.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:32 Heat of formation + Delta-G solvation = -37.302686 kcal Electronic energy + Delta-G solvation = -13996.985975 eV Core-core repulsion = 11454.523501 eV Total energy + Delta-G solvation = -2542.462474 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.053 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.73198 -39.57498 -39.30807 -36.89175 -34.83898 -32.34506 -30.63986 -28.42927 -26.04721 -23.36223 -22.69509 -21.88558 -19.89992 -18.48590 -17.92950 -17.28473 -17.00008 -16.32714 -15.73038 -15.40346 -15.14707 -15.04383 -14.91047 -14.01282 -13.80212 -13.10788 -13.00175 -12.82803 -12.25295 -12.04302 -11.97661 -11.74124 -10.74679 -10.29450 -10.09125 -9.31362 -8.97877 -6.41759 -0.99133 0.29057 0.88060 1.46369 1.58147 1.77519 1.94193 2.12878 2.46345 2.73941 2.83411 2.99625 3.46808 3.73540 4.16289 4.35149 4.41682 4.56375 4.96391 5.09605 5.27206 5.35377 5.46610 5.64892 5.74578 5.88652 6.20716 6.42386 6.92233 7.40196 8.22318 Molecular weight = 217.05amu Principal moments of inertia in cm(-1) A = 0.035503 B = 0.011845 C = 0.009267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.475587 B = 2363.262558 C = 3020.797939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C -0.017 4.017 3 Si 1.130 2.870 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.239 1.239 7 C -0.458 4.458 8 H 0.116 0.884 9 N -0.378 5.378 10 C 0.371 3.629 11 O -0.529 6.529 12 C 0.393 3.607 13 O -0.431 6.431 14 C -0.276 4.276 15 C -0.009 4.009 16 C -0.157 4.157 17 C -0.028 4.028 18 C -0.160 4.160 19 C 0.163 3.837 20 H 0.257 0.743 21 H 0.151 0.849 22 H 0.180 0.820 23 H 0.180 0.820 24 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.919 -11.690 -5.958 15.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.227 4.227 3 Si 0.947 3.053 4 H -0.209 1.209 5 H -0.202 1.202 6 H -0.162 1.162 7 C -0.583 4.583 8 H 0.133 0.867 9 N -0.087 5.087 10 C 0.162 3.838 11 O -0.410 6.410 12 C 0.267 3.733 13 O -0.304 6.304 14 C -0.280 4.280 15 C -0.027 4.027 16 C -0.175 4.175 17 C -0.046 4.046 18 C -0.181 4.181 19 C 0.066 3.934 20 H 0.067 0.933 21 H 0.169 0.831 22 H 0.197 0.803 23 H 0.197 0.803 24 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.092 -9.642 -5.129 13.022 hybrid contribution -0.406 -1.115 0.326 1.230 sum 6.687 -10.756 -4.803 13.545 Atomic orbital electron populations 1.70557 1.09199 1.30648 1.36048 1.28291 0.95554 1.06750 0.92095 0.82818 0.74249 0.69384 0.78884 1.20931 1.20228 1.16202 1.20716 1.04532 0.88311 1.44749 0.86694 1.41405 1.37613 1.05406 1.24265 1.21127 0.87622 0.91423 0.83675 1.90659 1.57399 1.39145 1.53749 1.22784 0.78175 0.90647 0.81680 1.90437 1.29325 1.80574 1.30109 1.20568 1.07795 0.96371 1.03304 1.21129 0.95071 0.90470 0.96033 1.21547 0.98099 1.02149 0.95726 1.21726 0.95292 0.90111 0.97501 1.20733 1.01667 0.97560 0.98093 1.19473 0.95294 0.83571 0.95083 0.93307 0.83100 0.80296 0.80280 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -51.73 12.08 21.76 0.26 -51.46 14 2 C -0.02 -0.96 4.54 85.13 0.39 -0.57 14 3 Si 1.13 47.90 30.01 68.60 2.06 49.96 14 4 H -0.28 -12.32 7.11 99.48 0.71 -11.62 14 5 H -0.28 -11.49 7.11 99.48 0.71 -10.79 14 6 H -0.24 -8.45 7.11 99.48 0.71 -7.74 14 7 C -0.46 -24.70 9.52 84.31 0.80 -23.90 14 8 H 0.12 5.60 7.98 -2.91 -0.02 5.58 14 9 N -0.38 -20.01 2.66 -459.91 -1.22 -21.23 14 10 C 0.37 21.39 6.85 87.27 0.60 21.99 14 11 O -0.53 -34.73 15.34 -3.70 -0.06 -34.78 14 12 C 0.39 19.32 7.95 27.78 0.22 19.54 14 13 O -0.43 -21.73 18.04 -3.48 -0.06 -21.79 14 14 C -0.28 -10.94 6.34 -19.99 -0.13 -11.07 14 15 C -0.01 -0.24 10.10 22.50 0.23 -0.01 14 16 C -0.16 -3.06 10.05 22.30 0.22 -2.83 14 17 C -0.03 -0.58 10.02 22.34 0.22 -0.36 14 18 C -0.16 -5.02 9.83 22.43 0.22 -4.80 14 19 C 0.16 6.87 6.68 38.54 0.26 7.13 14 20 H 0.26 16.65 7.21 -92.70 -0.67 15.98 14 21 H 0.15 3.43 8.06 -2.91 -0.02 3.40 14 22 H 0.18 1.81 8.06 -2.91 -0.02 1.79 14 23 H 0.18 2.00 8.06 -2.91 -0.02 1.97 14 24 H 0.14 4.08 8.06 -2.91 -0.02 4.06 14 Total: -1.00 -76.90 228.75 5.35 -71.55 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: 1.34 Total: 2.64 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 3.03 Total: 5.11 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -0.96 Total: -72.69 kcal Atomic # 8 Polarization: -56.45 SS G_CDS: -0.12 Total: -56.57 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.06 Total: 49.96 kcal Total: -76.90 5.35 -71.55 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019966874.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.248 kcal (2) G-P(sol) polarization free energy of solvation -76.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds